Gene Information

Name : Gbem_2672 (Gbem_2672)
Accession : YP_002139476.1
Strain : Geobacter bemidjiensis Bem
Genome accession: NC_011146
Putative virulence/resistance : Virulence
Product : winged-helix transcriptional response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3095799 - 3096488 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
ATGCACATTCTGGTGATCGAGGATGAGCCTAAGGTCGCGGGAGCGCTGAAGAAGGGGCTGGAGGCGGAAAACTATATGGT
TTCAGTCGCCGGCAGTGGTGAGGACGGGTTCTTTCGGCTTAATACGGAGGTCTTCGACCTTGTCCTTCTTGACCTGATGC
TACCGGGGCGCGATGGAATAGAGGTTCTCACCGCACTTAGAAAGCAGGGGTTCGACACGCCAGTTCTGATTCTCACTGCG
CGAGATTCTGTCGATGACCGAGTCCTGGGGCTTGACAGCGGCGCCGATGACTATCTGGTGAAACCGTTCGCCTTTCCGGA
ACTGCTGGCCCGGATACGCCTCGTCCTGCGCAGGGAGAAGAAAGAGAAAGAGCAGGTGTTGAAGCTCTTCCTCGCCGACC
TCGACCTGGATTTGGTGACACGAAAGGTGGTGCGCCACGACCAGGAGATCGAATTGACTGCGCGGGAATTCGAACTGTTG
GAGTACCTGCTGCGCTACAAGGGCAACATAGTGTCGCGTGAAATGCTGTCGAGGGACGTATGGCAGGTTAAGGATCGCTC
CACGCCGCTGGATAACGTCATCGACGTCCATATTGCACGCCTTCGGCGCAAGATCGACGGTCCCTTCAAGCTGAAGCTCC
TTAAGACGGTGCGGGGTCTGGGCTTCACCGTGAACGGTGAGGTGATATGA

Protein sequence : 
MHILVIEDEPKVAGALKKGLEAENYMVSVAGSGEDGFFRLNTEVFDLVLLDLMLPGRDGIEVLTALRKQGFDTPVLILTA
RDSVDDRVLGLDSGADDYLVKPFAFPELLARIRLVLRREKKEKEQVLKLFLADLDLDLVTRKVVRHDQEIELTAREFELL
EYLLRYKGNIVSREMLSRDVWQVKDRSTPLDNVIDVHIARLRRKIDGPFKLKLLKTVRGLGFTVNGEVI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-33 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-32 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator BAC0125 Protein 1e-36 48
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator BAC0083 Protein 6e-34 48
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator BAC0197 Protein 9e-35 48
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator BAC0638 Protein 2e-35 47
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator BAC0347 Protein 8e-31 45
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator BAC0308 Protein 8e-34 45
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator CP001918.1.gene5135. Protein 2e-18 45
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator NC_002695.1.915041.p Protein 8e-21 44
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator BAC0533 Protein 7e-21 44
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator CP004022.1.gene3215. Protein 1e-26 44
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator BAC0111 Protein 7e-33 44
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator CP000034.1.gene3834. Protein 8e-21 44
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator CP000647.1.gene4257. Protein 7e-21 44
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator CP001138.1.gene4273. Protein 5e-21 44
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator HE999704.1.gene1528. Protein 7e-17 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator VFG0596 Protein 3e-33 45
Gbem_2672 YP_002139476.1 winged-helix transcriptional response regulator VFG1390 Protein 3e-27 42