Gene Information

Name : Gbem_1846 (Gbem_1846)
Accession : YP_002138656.1
Strain : Geobacter bemidjiensis Bem
Genome accession: NC_011146
Putative virulence/resistance : Virulence
Product : winged-helix transcriptional response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2139989 - 2140669 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
ATGGAGACCATATTGATCATCGAAGACGAGAGGGACCTAGCGGAGCTTCTTGCCTTTAACCTGGAGAGAGAGGGGTACAA
GACAATAATAGCGGCCGACGGCATTGAAGGATTGGCAAACGCCGGTCACTGCCATCCAGACCTCATCATCCTCGACCTCA
TGCTCCCCGGCATGCTGGGCACGGAAGTTTGCAAGAACCTCAAGAAATCGGAAAGAACCGCTGGCATCCCGGTGATCATG
CTCACTGCCAAAGGGGAGGAGATCGATAAGGTGGTGGGATTCGAGGTCGGAGCGGACGACTACGTTGTCAAGCCGTTCTC
GAGCAGGGAATTGAACCTGCGCGTGAAAGCCGTACTCAGACGCAGCAATACCGAGACCGTCTCCAGCACGATGATCGAGT
TGGGCCCCATCACCATTGATACCGACCGTCATCAAGTCATGGTGAACGGAGAGGAGATCTTCTTCACCAGCACCGAATTC
AAGCTGCTGCATGTTCTGGCGCAGAGACTGGGAAGGGTGCAAAGCCGTGACGTTTTGTTGCGGGATGTGTGGGGCTACAA
CTTCGTGGACGACAGCCGAACCGTCGATACCCATATAACACGCTTGCGCACCAAGATGGGGGCGGCTGGCGATCTGATCA
AGACCGTGCGCGGTTTCGGCTATAAGCTCGAAGTGCAATGA

Protein sequence : 
METILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANAGHCHPDLIILDLMLPGMLGTEVCKNLKKSERTAGIPVIM
LTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVLRRSNTETVSSTMIELGPITIDTDRHQVMVNGEEIFFTSTEF
KLLHVLAQRLGRVQSRDVLLRDVWGYNFVDDSRTVDTHITRLRTKMGAAGDLIKTVRGFGYKLEVQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-29 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_003923.1003749.p0 Protein 5e-46 47
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_002952.2859905.p0 Protein 4e-46 46
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_009782.5559369.p0 Protein 6e-46 46
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_002951.3237708.p0 Protein 6e-46 46
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_002758.1121668.p0 Protein 6e-46 46
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_009641.5332272.p0 Protein 6e-46 46
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_013450.8614421.p0 Protein 6e-46 46
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_007793.3914279.p0 Protein 6e-46 46
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_007622.3794472.p0 Protein 4e-46 46
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_002745.1124361.p0 Protein 6e-46 46
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator HE999704.1.gene2815. Protein 8e-44 45
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_007622.3794948.p0 Protein 2e-38 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_003923.1003417.p0 Protein 2e-38 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_013450.8614146.p0 Protein 2e-38 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_002951.3238224.p0 Protein 2e-38 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_007793.3914065.p0 Protein 2e-38 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_002758.1121390.p0 Protein 2e-38 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_010079.5776364.p0 Protein 2e-38 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_002952.2859858.p0 Protein 2e-38 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_012469.1.7685629. Protein 4e-42 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator AE000516.2.gene3505. Protein 4e-41 44
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator AE015929.1.gene1106. Protein 2e-32 43
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator AE016830.1.gene1681. Protein 2e-42 42
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator BAC0125 Protein 2e-29 41
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator BAC0197 Protein 2e-31 41
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator BAC0039 Protein 3e-34 41
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator BAC0596 Protein 2e-33 41
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator CP000034.1.gene2186. Protein 3e-34 41
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator CP001138.1.gene2239. Protein 2e-33 41
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator NC_002695.1.916589.p Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator VFG1389 Protein 2e-31 43
Gbem_1846 YP_002138656.1 winged-helix transcriptional response regulator VFG0596 Protein 4e-30 41