Gene Information

Name : Gbem_1426 (Gbem_1426)
Accession : YP_002138241.1
Strain : Geobacter bemidjiensis Bem
Genome accession: NC_011146
Putative virulence/resistance : Virulence
Product : sigma-54-dependent transcriptional response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1645152 - 1646486 bp
Length : 1335 bp
Strand : +
Note : -

DNA sequence : 
GTGAACACCATTTTGATAGCTGACGATGACATCGCCATCCGGCGCACGCTGGAGCTGCACCTGACCGAAGAAGGTTATTC
GGTGGTGACGGCCGCGAACGGTCCCAATGCGGTCGAGGTTGCGCTGGAGAAGGAAATCGACCTGATGCTCCTCGATCTTA
GGCTCTCCGGGATGGATGGTTTCGAGGTGCTGGGGCGGGTAAAGGAGCGCCGCCCCGATCTCCCCGTCGTGATGATCACC
GCGTACGACGACATGCAGACCGCCATCGAGGCGATACGCCTGGGGGCCATCGACCATTTGGGCAAGCCGGTCGATCTCGA
TCACCTGGACCAGGTCATCGCCAAGATTTTCGACATGAGCGCCCTGGCCCGCAAAGGGGTCACCTTCTGCGACTCGGCCG
ATCCACCCTTCGAGCAGAACATCATGGTTGGCCGCTCGCGCAGCATGAAGGAGGTGTACAAGACCATCGGCGCGGTGGCA
GACTCCCGCGCCACCGTGCTGATCCAGGGGGAGAGCGGAACGGGGAAGGAAATGGTGGCGCGAGCGCTTCATTTCAACAG
TTCCTTCAGGAATCGCCCCTTCATTGCGGTTGCCTGCGCCTCGCTCGCGCCGTCGCTTCTGGAGAGCGAGCTCTTCGGCC
ACGAACGGGGCGCCTTCACGGGGGCCCACCGGACCAAGCCGGGGAAGTTCGAACTGGCGCAGGGGGGGACGCTCTTTCTC
GACGAGATCTCGGAGACGAGCCCGGAGATCCAGGTGAAGCTCTTGCGCTTTCTCCAGGAGAGGGAATTCGAGCGAGTGGG
GGGTGTAGAGACCCTGAAGGCCGACGTGCGGGTCATCGCCGCCAGCAACAAGGAACTCTCGGCGCTCGCCAATGCGGGCG
AATTCCGCAAGGACCTCTATTACCGCCTGAACGTGGTGACCCTTTTCCTCCCGCCGTTGCGCGAGCGAAAGGACGACATC
CTGCTCCTTGTCAAGTTCTTCTTGGGGAAGATGCGCGAGGAGACCGGCAAGAGCGTGGATATCGTCACCCAGGAAACGCT
CACCATGATCCAGGAGCACTCCTGGCCGGGAAACGTGCGCGAACTGGAGAACACGATCAGGCGTGCCGTGCTCCTCTCGC
ACGGGAACGTGCTGCTTCCGGAATCCCTGCACCTGGAAGGAGAGAAGGAGCAGGAGCGGCTGGCGCTGACGATCAGGCCG
CTGCACGAGGTGGAGCGCGAGCATATCGAGAACGTGCTCATCTACACGGGGTACGAGAAGAAGAGGACCGCAGAGATTCT
AGGCATCTCGCGGCCGACGCTGGATAGGAGGCTCAAGGAGTACGGATTGGAGTGA

Protein sequence : 
MNTILIADDDIAIRRTLELHLTEEGYSVVTAANGPNAVEVALEKEIDLMLLDLRLSGMDGFEVLGRVKERRPDLPVVMIT
AYDDMQTAIEAIRLGAIDHLGKPVDLDHLDQVIAKIFDMSALARKGVTFCDSADPPFEQNIMVGRSRSMKEVYKTIGAVA
DSRATVLIQGESGTGKEMVARALHFNSSFRNRPFIAVACASLAPSLLESELFGHERGAFTGAHRTKPGKFELAQGGTLFL
DEISETSPEIQVKLLRFLQEREFERVGGVETLKADVRVIAASNKELSALANAGEFRKDLYYRLNVVTLFLPPLRERKDDI
LLLVKFFLGKMREETGKSVDIVTQETLTMIQEHSWPGNVRELENTIRRAVLLSHGNVLLPESLHLEGEKEQERLALTIRP
LHEVEREHIENVLIYTGYEKKRTAEILGISRPTLDRRLKEYGLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-52 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-52 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbem_1426 YP_002138241.1 sigma-54-dependent transcriptional response regulator BAC0467 Protein 6e-74 46
Gbem_1426 YP_002138241.1 sigma-54-dependent transcriptional response regulator BAC0089 Protein 3e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Gbem_1426 YP_002138241.1 sigma-54-dependent transcriptional response regulator VFG1249 Protein 2e-57 42