Gene Information

Name : pyk (Gbem_1182)
Accession : YP_002137997.1
Strain : Geobacter bemidjiensis Bem
Genome accession: NC_011146
Putative virulence/resistance : Virulence
Product : pyruvate kinase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0469
EC number : -
Position : 1377208 - 1378653 bp
Length : 1446 bp
Strand : +
Note : -

DNA sequence :
ATGTTCCGTCACACAAAGATCGTTGCCACTGTCGGACCCGCCAGCGAATCCGAAGAGATGCTCGGCGCCTTGATAAAGGC
CGGCGTCGACGTTTTCCGCCTCAACTTCTCCCATGGCGACCATGCCGCCAAATCCGCCGTCATCCGCAGCATCCGCAAAC
TCTGCGACCAACATGAGCATTCTGTCGCCATCCTCGGGGACCTGCAGGGGCCGAAGATCCGCACCGGCCTCATGAAGGGG
GGCGGGATGCAGCTCACCGCCGGGACCGAAGTGATCGTCACCACCCGTGAGCTGCTAGGCGAGGGGAGCCTCATCCCGAC
CATCTACCAGGGGCTCCCCGGGGACGTGAAGCCCGACGACCGCATCCTTTTGGACGACGGCCTGATGGAGCTGAGGGTGC
TGGGGGTGGAAGGGGGCGATGTGCGCTGCCTCGTCGTGACCGGAGGCCTCCTCAAGGACCGCAAGGGGATCAACCTCCCC
GGCGCCAAGGTTTCCGCCCCCGCCATGACCGGCAAGGACCGCGACGACCTCGAATTCTGCATGGAGCAGCGGCTTGACTA
CGTCGCCCTTTCCTTCGTGCGCGAGGCATCCGACGTGCAGGAATTGAGGAGCATCATCGACAGCCGCGGCTCCCAGCTCC
GCATCATCTCCAAGATCGAGAAGCCGGAGGCGGTGCTCAACTTCGGCGCCATCTTGCAGGCTTCCGACGGGGTCATGGTG
GCCCGAGGCGACCTGGGGGTGGAGTTGAATCCCGAGAAGGTTCCGCTCATCCAGAAGCGGATCATCCGCAGTTGCAACGA
TGCCGGAAAGCCGGTGATCACCGCCACCCAAATGCTGGAGAGCATGGTGAACAACCCGCGCCCGACCCGCGCCGAGACCT
CCGACGTCGCCAACGCCATCCTGGACGGCACCGACGCCATCATGCTTTCCGCCGAGACCGCGTCCGGCAAGTATCCGGTG
GAGGCGGTCTCCATGATGGTGCAGGTGGCGCGCGACGTGGAAGCGGACCCGCAGCTCATGGCGCAAAGCTGCCACATCGC
CCAGACCGAGGCGGAGCCGAACCTCTCCGAGGTGATCGGGCTTGCCGCCTGCCATGCGGCGGAAAGCGTCAAGGCATCGG
CGATCCTTGCCTTCACCCAGACCGGAGGGACCGCGGCTCTCGTTTCCAAGTGCCGGCCGGCCCAGCCCATCATCGCCGTG
ACACCATCCGAAGAGGTGCGGCGCGTGCTCGCCCTTTATGCCGGGGTGCATTCGCTGCGCGTAGATATCGAGGGGGACAC
TGAATCCCAGATCATCTCCGTCGAGAAAGCGGTGCTGGAAACCGGCTGGCTCAACAAGGGGGAGTTGGTGGTGATAACCA
TGGGAAGCCCGCTTTCTTCAGCGGGAACCACCAACCTGATGAAGGTGCATCGGCTGGGGGAGCCTGAGGTTAAGCGGCGT
CTTTGA

Protein sequence :
MFRHTKIVATVGPASESEEMLGALIKAGVDVFRLNFSHGDHAAKSAVIRSIRKLCDQHEHSVAILGDLQGPKIRTGLMKG
GGMQLTAGTEVIVTTRELLGEGSLIPTIYQGLPGDVKPDDRILLDDGLMELRVLGVEGGDVRCLVVTGGLLKDRKGINLP
GAKVSAPAMTGKDRDDLEFCMEQRLDYVALSFVREASDVQELRSIIDSRGSQLRIISKIEKPEAVLNFGAILQASDGVMV
ARGDLGVELNPEKVPLIQKRIIRSCNDAGKPVITATQMLESMVNNPRPTRAETSDVANAILDGTDAIMLSAETASGKYPV
EAVSMMVQVARDVEADPQLMAQSCHIAQTEAEPNLSEVIGLAACHAAESVKASAILAFTQTGGTAALVSKCRPAQPIIAV
TPSEEVRRVLALYAGVHSLRVDIEGDTESQIISVEKAVLETGWLNKGELVVITMGSPLSSAGTTNLMKVHRLGEPEVKRR
L

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pykF YP_216386.1 pyruvate kinase Not tested SPI-2 Protein 2e-77 44
pykF NP_805051.1 pyruvate kinase Not tested SPI-2 Protein 2e-77 44
STY1744 NP_456147.1 pyruvate kinase Not tested SPI-2 Protein 5e-78 44
pykF CAA68205.1 pyruvate kinase like protein Not tested SPI-2 Protein 1e-76 44
pykA NP_273151.1 pyruvate kinase Not tested IHT-A Protein 2e-64 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pyk YP_002137997.1 pyruvate kinase VFG0479 Protein 1e-77 44