|
Name : xerD (MADE_1004005) Accession : YP_004425947.1 Strain : Alteromonas macleodii Deep ecotype Genome accession: NC_011138 Putative virulence/resistance : Unknown Product : tyrosine recombinase XerD Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4974 EC number : - Position : 863258 - 864184 bp Length : 927 bp Strand : + Note : site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers d DNA sequence : ATGGCAAAAAAAGAGCGAGAGTTAACCTATGTGCCGCCAGCAAGTCAGGCACATATTGATGGCTTTATCGAAATGCTATG GCTGGAAAAGGGTTTGTCAGAGCACACGCAACAAAGCTATCGTACCGACCTTAGTAAGCTTGCTGTTTTCAGCAACAACC AAGGCATAAAAGACATTGCAGTGCTGAGTACTGAACAGCTTCAAGACTACCTTGCTTATCGTCATGATAAAGGCTTATCT ACCCGCAGTACTCAACGCGCGCTAAGCGCTATTCGCGCCTTCTTTGTTTACCTTATTAGTAAGCAGATAAGAGTGGACAG CCCGGTCTCTGCCTTGTCGAACCCGAAAACACCTAAAGCGTTACCTGCTTCACTCAGTGAGCAGCAGGTAGAAGATTTAC TTAATGCCCCCCAAACCGACGACCCCATTGAATGTAGAGATAGAAGCATGCTTGAAGTGCTATACGCTACTGGACTTCGA GTCAGTGAACTTATCGGTTTAACGATGGACCAGATAAGCCTTCAGCAAGGTGTGGTACGAGTGGTAGGCAAAGGTAATAA AGAGCGTTTAGTTCCGTTAGGTGAGGAAGCTATAGAATGGCTGCTTACCTATATCAAAACAGCGCGACCTATACTCGCTA CTAAAACCTCTGATTTTGTGTACCTCAGTAAGCGGGGTCAAAAGATGACGCGGCAAACTTTTTGGCATCGCATTAAATAT TATGCAGTAAAGGCGGGAATAGAGCAGCACTTGTCTCCTCACACCCTAAGACATGCTTTCGCCACGCATTTGCTCAACCA CGGGGCTGATTTGCGAGTGGTTCAAATGTTGTTGGGACATAGCGACCTATCGACAACCCAAATATACACGCACGTAGCCA CTGAAAGGTTGCAAACGTTGATTCACAGTCATCACCCAAGGGGCTAA Protein sequence : MAKKERELTYVPPASQAHIDGFIEMLWLEKGLSEHTQQSYRTDLSKLAVFSNNQGIKDIAVLSTEQLQDYLAYRHDKGLS TRSTQRALSAIRAFFVYLISKQIRVDSPVSALSNPKTPKALPASLSEQQVEDLLNAPQTDDPIECRDRSMLEVLYATGLR VSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEEAIEWLLTYIKTARPILATKTSDFVYLSKRGQKMTRQTFWHRIKY YAVKAGIEQHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLQTLIHSHHPRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00307 | YP_008207772.1 | Site-specific recombinase XerD | Not tested | AbaR25 | Protein | 9e-65 | 50 |
| BJAB0868_00311 | YP_008211637.1 | Site-specific recombinase XerD | Not tested | AbaR26 | Protein | 9e-65 | 50 |
