Gene Information

Name : MADE_1003300 (MADE_1003300)
Accession : YP_004425806.1
Strain : Alteromonas macleodii Deep ecotype
Genome accession: NC_011138
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 672090 - 673058 bp
Length : 969 bp
Strand : +
Note : may be involved in the transfer of antibiotic resistance genes to plasmids and transposons; Derived by automated computational analysis using gene prediction method: GeneMarkS+.

DNA sequence : 
ATGAAGTCTCAGTTTATTAAATCCCTGTACGAGCACATGATGCTCAAGCGCTATGCAAAGCGTACTATACAAACCTACAT
AAACTGGATTTCAGATTACATTCGTTTTCACAAATTTCAGCACCCGAAAGATCTCGACGTGTTGCATGTTGAAGCATACC
TTACTCATCTATCTACCAAGCGAAAAAATGCGCGGTCTACACAAGCCACAGCACTTAATGCATTGGTCTTCCTGTACAAC
AAGTATTTAGAACAGCCACTCCCTTCTGACATGAATTTTGTAGGAAGCGGAAGGGAAAGAAAGCTGCCAGTTGTGCTAAC
CCAGTTAGAAGTAAAAGCATTGCTTGGTAGGGTGCCTACCCATCATTACTTAGCAGTAGCACTTCTTTATGGCAGTGGCC
TTCGATTAATGGAGTGCGTGCGTCTTAGAACGGGAGATATAGACTTCGACTACAAGTGTGTGAGGATTTGGTTTGGGAAA
GGGGGCAAGCATCGAGTGGTAACACTGTCAGAATCACTTATCCCACTTTTAAAAAATCATATCAGTGAAAGTGAAAAACT
TTTGCAACGAGATTTGATGGTGCCAGACTTTGCTGGTGCTTGGATTCCACATGGGTTGAGGAAAAAGTATCAACAGCGCA
ATAAAACGCTGGAATGGCAGTATTTGTTCCCTGCATCAAAGTTAAGTATCGATCCAGAAAGCAAGCTATTACGGCGTCAT
CATATAGATGAAAAACAGATACAACGCGCGGTAAGTCGTGCTTCAAGTGATGCGGGAATAATCAAGCATGTTACGCCTCA
CACGCTTCGTCATTCATTTGCTACTCATTTACTGCAATCTGGCGCAGACATCAGAACGGTGCAAGACCAACTAGGTCATG
CCGATGTTAGAACCACTCAAATTTATACCCATATACTTCAACAAGGAGCGAATGGTGTCGTCAGCCCACTTTCTAATTTA
GCGTTTTAG

Protein sequence : 
MKSQFIKSLYEHMMLKRYAKRTIQTYINWISDYIRFHKFQHPKDLDVLHVEAYLTHLSTKRKNARSTQATALNALVFLYN
KYLEQPLPSDMNFVGSGRERKLPVVLTQLEVKALLGRVPTHHYLAVALLYGSGLRLMECVRLRTGDIDFDYKCVRIWFGK
GGKHRVVTLSESLIPLLKNHISESEKLLQRDLMVPDFAGAWIPHGLRKKYQQRNKTLEWQYLFPASKLSIDPESKLLRRH
HIDEKQIQRAVSRASSDAGIIKHVTPHTLRHSFATHLLQSGADIRTVQDQLGHADVRTTQIYTHILQQGANGVVSPLSNL
AF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 2e-41 46
int1 YP_005160012.1 integrase Not tested Not named Protein 1e-45 46
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 6e-55 45
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 7e-55 45
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 3e-54 45
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 6e-55 45
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 7e-55 45
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 3e-54 45
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 9e-55 45
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 6e-55 45
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 6e-55 45
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 3e-54 45
intI YP_001844881.1 integrase Not tested AbaR20 Protein 8e-55 45
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 6e-55 45
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 3e-54 45
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 8e-55 45
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 6e-55 45
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 3e-54 45
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 8e-55 45
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 6e-55 45
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 3e-54 45
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 8e-55 45
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 6e-55 45
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 3e-54 45
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 6e-55 45
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 2e-54 45
intI1 AAK02045.1 integrase Not tested SGI1 Protein 3e-54 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MADE_1003300 YP_004425806.1 integrase VFG1028 Protein 1e-54 45