Gene Information

Name : MADE_1015535 (MADE_1015535)
Accession : YP_004428237.1
Strain : Alteromonas macleodii Deep ecotype
Genome accession: NC_011138
Putative virulence/resistance : Virulence
Product : XRE family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3442141 - 3442821 bp
Length : 681 bp
Strand : +
Note : Derived by automated computational analysis using gene prediction method: Protein Homology.

DNA sequence : 
ATGAAAGTGCTACTTGTAGAAGATGATCCTAAAGTTGCCTCGCACATTGCAAATGGACTATTGGGTGAAGGGCATGAATG
TATTACCGTTGGTGACGGCGCATCAGGCTTCAACGAAGCCTCAAGTAATGAGTTAGATGCGGTAATTTTAGACGTAATGC
TGCCGGAACTTGACGGTTTTTCTGTCTTGGAAAAACTACGAGAGGAAGGTAACACCACACCCGTTCTGCTATTAAGTGCC
AAGAGCCAAGTTGAAGACAAGGTAAAAGGTCTACGCACAGGCGCAAACGACTACCTGACCAAACCTTTCGCCTTCGAGGA
ATTGTTGGCGCGTGTTGAAGGTTTAGCTGGTCGCAACAAAGACGGTGAAGATAAAACCCTCATCAAAGTCGGCGATCTCA
CCCTCGATTTAGTAAATCGCAAAGTGTTGCGAGGCGATCAAGAAATTGATCTTCAATCGAAAGAGTTTCAGCTTTTAGAG
TGTTTGCTTCGTCACAAGGGTAAGGTTGTTACCCGGAGCATGCTGCTAGAGCAAGTTTGGAATTATCATTTCGATCCGCA
AACCAATGTTATCGACGTGCATATTAGCCGCTTGCGACAAAAAGTTGATAAAGCGTTTAATGTTCCGCTTATTGAAACCG
TTCGCGGTACCGGTTATCGCATAGCGGATGGGCTTGCATGA

Protein sequence : 
MKVLLVEDDPKVASHIANGLLGEGHECITVGDGASGFNEASSNELDAVILDVMLPELDGFSVLEKLREEGNTTPVLLLSA
KSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKDGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLE
CLLRHKGKVVTRSMLLEQVWNYHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRIADGLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-37 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator BAC0308 Protein 4e-47 48
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator BAC0638 Protein 5e-44 48
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator BAC0083 Protein 2e-47 46
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator BAC0347 Protein 2e-45 46
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator BAC0111 Protein 3e-48 46
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator BAC0197 Protein 3e-46 46
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator BAC0125 Protein 7e-45 44
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator AE016830.1.gene1681. Protein 4e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator VFG0596 Protein 2e-37 43
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator VFG1389 Protein 4e-35 43
MADE_1015535 YP_004428237.1 XRE family transcriptional regulator VFG1390 Protein 6e-39 42