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Name : ureC (MADE_1014280) Accession : YP_004427988.1 Strain : Alteromonas macleodii Deep ecotype Genome accession: NC_011138 Putative virulence/resistance : Virulence Product : urease subunit alpha Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG0804 EC number : 3.5.1.5 Position : 3191954 - 3193657 bp Length : 1704 bp Strand : - Note : ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alp DNA sequence : ATGGCAACTATCGATAAACATTCATATGCACATATGTTTGGGCCCACAATTGGCGATCGCGTTCGCTTAGGGGATACGGA CTTATGGCTTGAAGTGGAAAAAGACTTTACCGAGTATGGTGAAGAAGTGAAATTTGGTGGTGGAAAAGTAATTCGGGACG GTATGGGGCAAAGCCAAGCAAGCTGTTTTGATACGCCAGACCTTGTAATCACGAACGTAGTTATTCTGGACCATTGGGGA ATTATTAAAGCTGATATTGGTATCAAAGATGGCCGTATTGCTATTATTGGTAAAGCTGGTAACCCAGATGTTCAAGACAA TATTGATATTGAAATCGGACCCGGCACAGAAATAATTGCAGGTGAAGGTCAGATAGTTACGGCCGGTGGTATAGATGCGC ACATTCATTTTATATGCCCACAACAAATAGACGAAGCGCTAATGTCGGGTGTGACTACGATGATTGGTGGTGGAACGGGG CCTGCTACAGGTAGTAACGCTACCACTTGTACCCCAGGACCTTGGAATACTCATAAAATGCTTCAAGCTACTAATGATTT TCCTATGAATTTTGGCTTCTTAGGAAAGGGGAATACGAGTTTACCTATTGCGTTAGAAGAGCAAATTGAAGCAGGCGTAT GTGGCTTAAAACTGCATGAAGATTGGGGGACTACCCCAGCTTCTATCGATAATTGTTTATCAGTAGCGGAGCGGTATGAC GTTCAAATAGCAATTCATACCGATACACTCAATGAGTCTGGTTTTGTTGAAGATACGTTAGGTGCGTTTAAAGGGCGCAC CATACATACTTATCACACGGAGGGGGCAGGTGGCGGTCATTCTCCCGATATTATCCGCGCCTGTGGCGAGTCAAACGTAT TACCTTCTTCCACTAATCCTACGCGCCCTTACACAATCAATACCATAGATGAACATCTTGATATGTTAATGGTTTGCCAT CACTTAGACCCGGCTATACCAGAAGATATCGCGTTTGCAGACTCTCGTATCCGAAAAGAAAGCATTGCGGCTGAAGATAT CATGCATGACTTGGGTGCTATCAGTATGATTGCCTCAGATTCCCAAGCGATGGGGCGTGTTGGTGAAATGATTACTCGTA CTTGGCAAACTGCACATAAAATGAAGCAGCAACGTGGCCCCCTAGCGCCGGATACTGAACGAAATGATAACTTTCGTTTA AAGCGTTATGTTGCGAAATATACAATTAATCCGGCAATTAGCCACGGCATTAGCCATGAAGTTGGTTCTATCGAAATAGG GAAGCTCGCAGATTTAGTGCTTTGGAAACCTGCATTTTTCGGTATCAAGCCCGCGATGATAATTAAGTCAGGGTTTATTG CGGCAGCCCCCATGGGCGATGCGAATGCGTCAATACCCACGCCTCAACCCGTCTACTACAGACCTATGTTTGGTGCACAT GGGCAGGCGCCTGCCAATACTTCAATGACATTTATGTCTCAAGCTTCTTTAGATGCTGGGGTACCAGATAAAATTGGTTT GACACGTATGGTAAGCGCTTGCAAAAATACACGTAACATAGGCAAAGACGACATGATCCATAATAGTTGGCAACCTACTA TTGAAGTGGATGCTCAAACCTATGAGGTGCGTGCGAACGGGGAGTTACTCACATGTGAACCAGTAACGACACTGCCACTG GCACAGCTGTACTGTCTGTTTTAA Protein sequence : MATIDKHSYAHMFGPTIGDRVRLGDTDLWLEVEKDFTEYGEEVKFGGGKVIRDGMGQSQASCFDTPDLVITNVVILDHWG IIKADIGIKDGRIAIIGKAGNPDVQDNIDIEIGPGTEIIAGEGQIVTAGGIDAHIHFICPQQIDEALMSGVTTMIGGGTG PATGSNATTCTPGPWNTHKMLQATNDFPMNFGFLGKGNTSLPIALEEQIEAGVCGLKLHEDWGTTPASIDNCLSVAERYD VQIAIHTDTLNESGFVEDTLGAFKGRTIHTYHTEGAGGGHSPDIIRACGESNVLPSSTNPTRPYTINTIDEHLDMLMVCH HLDPAIPEDIAFADSRIRKESIAAEDIMHDLGAISMIASDSQAMGRVGEMITRTWQTAHKMKQQRGPLAPDTERNDNFRL KRYVAKYTINPAISHGISHEVGSIEIGKLADLVLWKPAFFGIKPAMIIKSGFIAAAPMGDANASIPTPQPVYYRPMFGAH GQAPANTSMTFMSQASLDAGVPDKIGLTRMVSACKNTRNIGKDDMIHNSWQPTIEVDAQTYEVRANGELLTCEPVTTLPL AQLYCLF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ureC | NP_286680.1 | urease subunit alpha | Virulence | TAI | Protein | 0.0 | 68 |
| ureC | NP_287088.1 | urease subunit alpha | Not tested | TAI | Protein | 0.0 | 68 |
| ureC | YP_005684266.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 6e-162 | 61 |
| ureC | YP_005682174.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 6e-162 | 61 |
| ureC | YP_003784325.1 | urease subunit alpha | Not tested | PiCp 7 | Protein | 6e-162 | 61 |
| ureC | YP_005686358.1 | Urease alpha subunit | Not tested | PiCp 7 | Protein | 6e-162 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ureC | YP_004427988.1 | urease subunit alpha | VFG0270 | Protein | 6e-165 | 63 |
