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Name : MADE_1001245 (MADE_1001245) Accession : YP_004425396.1 Strain : Alteromonas macleodii Deep ecotype Genome accession: NC_011138 Putative virulence/resistance : Virulence Product : MSHA biogenesis protein MshE Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 272996 - 274708 bp Length : 1713 bp Strand : + Note : Derived by automated computational analysis using gene prediction method: Protein Homology. DNA sequence : ATGCAACCTCGATTAAAGATGCGCCTTGGCGATTTATTAGTCCATGAAAACATTGTTACCAGCGAACAGCTTGATAGCGC ATTATCGGCTCAGCGTTCATCAGGCCGGAAACTCGGTGATACCCTTATCGACTTGGGGTTCATTAGCGAACCTCAACTGC TTCGTTTTCTTGCACAACAGCTAAACATTCCATTTTTAGATATTACACAACGCCGTATCGACCCTGAACAAGCGCAGCTT ATTCCTGAAGCCTATGCAAGGCGCTACCGCGCGCTGGTGCTTGAGGCTGATGATGAGGAAGTACTGCTAGGTATGAGCGA CCCCACCGACTTAGGCGGTCTTGATCAGTTAGGTCCGCTAGTAGCGCCGCGCAATATCGAGCTGGCAATAGTTCAAGAAA ATCAGATGTTAGAAGCGTTTGATTCCGTTTATCGTCGTACCCAGGATATAGCGTCATTTGCAGAAAAGTTAGGTGAAGAG TACGCCGATGAAGCCGACTTTGAACTCTCTGCCTTAGACGATACCACCTCTGATGCCACCGTAGTAAAGCTACTTCACTC TATTTTTGAGGATGCGGTTCAGGTGCGAGCATCAGATATTCATATAGAGCCAGATGAAAAAATTCTTCGTATTCGCCAAC GTGTTGATGGGGTGTTACAGGAAAATACATTAAACCAAGTAAAGATTGCTTCGGCACTAGTACTTAGATTAAAGCTGATG TCGGGCTTAGATATCTCTGAAAAGCGCATACCGCAAGACGGCCGCTTCAATATCAAGGTAAAAGGCCACGTCCTCGATGT GCGTGTATCCACCATGCCGGTGGCAAATGGTGAAGCTGTAGTGATGCGTTTGCTAGACCAGTCTGCGGGCCTGTTAACGT TAGACCAAACGGGAATGCCCGATGCTATGGCGGAAAAGTTTCGCGCCGCTATCAACCGCCCTCACGGCATGATATTGGTA ACCGGGCCAACAGGGTCAGGTAAAACGACAACCTTGTACGGCGCACTAAGCGAGCTTAACAAACCTGATTTGAAAATTAT TACCGCTGAAGACCCCATTGAATACCGCTTACCTCGCATTAATCAAGTTCAGGTGAACAGCAAAATCGGCTTAGACTTCG CGGCTATTTTGCGTACCACACTTCGTCAAGACCCCGACATTATCATGGTGGGGGAAATGCGTGACCAAGAAACCGTTGAA ATTGGATTAAGAGGCGCGTTAACGGGCCACTTAGTATTGAGTACGCTTCACACCAATGACTCTGTAACCAGTGCTATTCG TCTTATTGATATGGGAGCGGCGCCCTATCTTGTGGCTACGTCGTTACGTGGTGTGTTAGCACAGCGACTTGTGCGTAGAG TGTGTGAGAACTGCAAGCAAGAAAAAGCGCCTTCTGCGCAAGAACAAGCCTGGGTTGGCTTTTTAAAACCTGAACTTACA AACGCTAGTTTTTACAAGGGGCGAGGCTGTAACAGCTGTAATCATACCGGTTACAAAGGACGTATTGGTGTCTTTGAGTT TTTAGAAATGAATGAAGACATGATGGAAGCGCTGCGCGACGACAATACGCAGGGTTTTGTTGATGCAACAAAGGCAAACA AAGACTTTGTTCCGCTGTCTCATATGGCGCTAGATTATGCGGCAGAAGGCAAAACTTCTTTAGACGAAGTTTTCAAAGTG GCTGAGTTTGTACCAGAGGTTGTGAACCACTAA Protein sequence : MQPRLKMRLGDLLVHENIVTSEQLDSALSAQRSSGRKLGDTLIDLGFISEPQLLRFLAQQLNIPFLDITQRRIDPEQAQL IPEAYARRYRALVLEADDEEVLLGMSDPTDLGGLDQLGPLVAPRNIELAIVQENQMLEAFDSVYRRTQDIASFAEKLGEE YADEADFELSALDDTTSDATVVKLLHSIFEDAVQVRASDIHIEPDEKILRIRQRVDGVLQENTLNQVKIASALVLRLKLM SGLDISEKRIPQDGRFNIKVKGHVLDVRVSTMPVANGEAVVMRLLDQSAGLLTLDQTGMPDAMAEKFRAAINRPHGMILV TGPTGSGKTTTLYGALSELNKPDLKIITAEDPIEYRLPRINQVQVNSKIGLDFAAILRTTLRQDPDIIMVGEMRDQETVE IGLRGALTGHLVLSTLHTNDSVTSAIRLIDMGAAPYLVATSLRGVLAQRLVRRVCENCKQEKAPSAQEQAWVGFLKPELT NASFYKGRGCNSCNHTGYKGRIGVFEFLEMNEDMMEALRDDNTQGFVDATKANKDFVPLSHMALDYAAEGKTSLDEVFKV AEFVPEVVNH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 8e-84 | 42 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-84 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| MADE_1001245 | YP_004425396.1 | MSHA biogenesis protein MshE | VFG1876 | Protein | 1e-86 | 45 |
| MADE_1001245 | YP_004425396.1 | MSHA biogenesis protein MshE | VFG0182 | Protein | 2e-83 | 43 |
| MADE_1001245 | YP_004425396.1 | MSHA biogenesis protein MshE | VFG0233 | Protein | 7e-73 | 43 |
| MADE_1001245 | YP_004425396.1 | MSHA biogenesis protein MshE | VFG2048 | Protein | 8e-84 | 42 |
