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Name : smpB (MADE_1009165) Accession : YP_004426969.1 Strain : Alteromonas macleodii Deep ecotype Genome accession: NC_011138 Putative virulence/resistance : Unknown Product : single-stranded DNA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 2001323 - 2001802 bp Length : 480 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAAAAAGAACAAAGCCAACAAAAACACCTCTGGAAATATCGCGCAAAATAAAAAGGCGCGTCACGACTATTTTCTAGA AGACAAGTTCGAAGCAGGTCTGGAGCTTCAGGGGTGGGAAATTAAAAGTATTCGCGCAGGTAAAGTTAATATCACTGACG CGTACATTATTATTCAAAACGCCGAAGCGTATTTAGTGGGCTGTAGAATTAGTCCGTTGAATCAGGCCTCAACCCACGTG GTTGCTGCACCAGAGCGCGCCCGCAAACTGCTGCTAAAGAAACGTGAAATAGATCGCTTAATGGGTGCTCGAGACCGCCA GGGTTACTCTATTGTCGCTACTTCCATGTATTGGAAGAAATGTTGGGTAAAGCTAGAAATTCACTTAGCTAAAGGTAAGC ACGCCCACGATAAGCGCGACACCTTAAAAGACAAAGACTGGCAGCGCCAAAAAGAACGGATGATGAAACACAGCGTTTAA Protein sequence : MKKNKANKNTSGNIAQNKKARHDYFLEDKFEAGLELQGWEIKSIRAGKVNITDAYIIIQNAEAYLVGCRISPLNQASTHV VAAPERARKLLLKKREIDRLMGARDRQGYSIVATSMYWKKCWVKLEIHLAKGKHAHDKRDTLKDKDWQRQKERMMKHSV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 3e-45 | 57 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 5e-22 | 48 |
