Name : lysS (MADE_1006470) Accession : YP_004426434.1 Strain : Alteromonas macleodii Deep ecotype Genome accession: NC_011138 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1311453 - 1313021 bp Length : 1569 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGACCAACAAACAGACGATAACAAATTGATTGCAGAGCGCCGTGCCAAATTGAGCGCTATTCGCGAGCAGTGCCG TGCCAACGGTTTCCCAAACAGCTTCCGTCGTGAAAACTATGCGGATGAGCTGCAAGCTAAGTTCGGTGAATTCGACAAAG AAACCTTGCAAGAGCAGGGCAACAAGGTAAGCATTGCTGGCCGTATTATGGCAAAGCGTGGTCCTTTCATGTTGCTTCAA GACATGACAGGCCGTATTCAAGCTTACGCAGACAAAGACACGCAAAAAGCACTTAAAGCAAAATACGGTGCGCTAGATAT TGGTGACATCATTGGCGTAGCGGGCGACCTGCACAAGTCAGGTAAAGGCGACCTTTACGTAAACATGGAGCAATACGAGC TGCTAACAAAAGCACTTCGTCCGTTGCCAGAAAAATTCCACGGTTTGAGCGACCAGGAAACCAAGTATCGCCAGCGCTAT GTTGACTTGATCACAAGCGAACAAACCCGCAAAACCTTTATGATCCGCAGTAAAATTGTGAATGGTATTCGCAATTACCT GACCGAGCGTGACTACCTAGAAGTAGAAACGCCAATGCTACAGGTTATTCCAGGTGGCGCGACGGCGAAGCCGTTTGTCA CTCACCACAATGCGCTAGATATCGACATGTATCTGCGTATTGCGCCAGAGCTTTACCTTAAGCGTTTGGTTGTTGGTGGC TTTGAGCGTGTGTTCGAAATTAACCGAAACTTCCGTAACGAAGGCTTATCAACCCGTCATAACCCTGAGTTTACTATGCT TGAATTCTACCAAGCGTATGCAGACTACAACGACCTGATGAACCTTACCGAAGATATGCTGCGCACGTTAGCGGAAGACA TTCTTGGTACCAGCATTATCAAGAACACAACGAAAGACGCTGAAGGTAACGTAACGTCTGAAGTAGAGTATGACTTTGGT AAGCCGTTCGACCGTTTGAGCATGGGCGAGGCGATTCTTAAATACTGGCCTGAAGCTGATGAAGCCGCTATTCGCGACCC AGAAGCGAACCTAGATTCGCTTAAAGCGATGGCAAAGCAGCTTCATATCAAAGAGCCTGAAGTTGACGGTATTTGGGGCG CGGGTAAATACCTGTGCGAAATCTTCGAAGCAACAGCTGAAGAGAAGCTTGAACAACCTACGTTTATCACTGAATACCCT TGGGAAGTATCGCCGCTAGCACGTCGTAATGACAACAACCCGTTCATTACCGACCGTTTCGAGTTCTTCGTAGGCGGACG TGAATTAGCCAACGGCTTTAGCGAGCTTAACGACCCAGAAGACCAAGCTGAACGTTTTGCAAAGCAAGTTGAAGAAAAAG ACGCGGGCGATGATGAAGCCATGCACTTTGACGATGACTATATTCGTGCACTTGAGTACGGCTTACCGCCAACAGCGGGT GAGGGTATTGGTATCGACCGCCTAGCTATGCTATTTACCGATAGCTCAACTATCAAAGACGTTATCTTGTTCCCACATAT GAAGCCTCAAGCGCCGAAAGACGCGCAAGAAGCCGGTGAGCAAGCGTAA Protein sequence : MTDQQTDDNKLIAERRAKLSAIREQCRANGFPNSFRRENYADELQAKFGEFDKETLQEQGNKVSIAGRIMAKRGPFMLLQ DMTGRIQAYADKDTQKALKAKYGALDIGDIIGVAGDLHKSGKGDLYVNMEQYELLTKALRPLPEKFHGLSDQETKYRQRY VDLITSEQTRKTFMIRSKIVNGIRNYLTERDYLEVETPMLQVIPGGATAKPFVTHHNALDIDMYLRIAPELYLKRLVVGG FERVFEINRNFRNEGLSTRHNPEFTMLEFYQAYADYNDLMNLTEDMLRTLAEDILGTSIIKNTTKDAEGNVTSEVEYDFG KPFDRLSMGEAILKYWPEADEAAIRDPEANLDSLKAMAKQLHIKEPEVDGIWGAGKYLCEIFEATAEEKLEQPTFITEYP WEVSPLARRNDNNPFITDRFEFFVGGRELANGFSELNDPEDQAERFAKQVEEKDAGDDEAMHFDDDYIRALEYGLPPTAG EGIGIDRLAMLFTDSSTIKDVILFPHMKPQAPKDAQEAGEQA |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-131 | 54 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
lysS | YP_004426434.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 2e-131 | 54 |