Gene Information

Name : HY04AAS1_0638 (HY04AAS1_0638)
Accession : YP_002121303.1
Strain : Hydrogenobaculum sp. Y04AAS1
Genome accession: NC_011126
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 572895 - 574205 bp
Length : 1311 bp
Strand : +
Note : TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: sul:SYO3AOP1_1757 nucleotide sugar dehydrogenase

DNA sequence :
ATGATAAACATAGAAGATTTTATAAACAAACAAGAGTCAATATGCGTAGTAGGGCTTGGATATGTAGGGCTTCCATTGGC
TGTAACGTTTGCAAAACACTTTAACGTAATAGGTTTTGATATAAACCAAATAAGGATAAACGAACTAAAATTAGGTATAG
ACAGAACAAAGGAAACCACTTCTGAAGAACTTCTAAATAGCAACATACTTTTTACGGACAACGAAGAGTATATAAAAAAA
TGTAAATTTATTATCATCACAGTACCAACGCCTATAGATAAACACAAAGTACCAGACCTAAAACCTATATTTAGTGCATC
TGTTATAGTTGGTAGAAATTTACAAAAAGACAGTATAGTGGTGTATGAATCTACAGTATATCCTGGTCTAACGGAAGAAG
AATGTGTACCTATTTTAGAAAAAGAATCAGGGCTTAAATGGAAAAAAGATTTCTTTGTGGGCTATTCACCAGAACGCATA
AATCCTGGTGATAAAATACATAGGTTTGAAAATATAGTAAAAGTAGTTTCTGGAGACAGCGAATATAGCCTTAACATAAT
AAGTGGAATATACTCTAAGGTTGTAAAAGCTGGAATATTTAAAGCAAAATCTATAAAAGTTGCAGAAGCCGCTAAAGTTA
TAGAAAATACTCAACGAGATATAAACATTGCACTTATGAACGAACTATCGATGATCTTTCATAAAATGGGTATAGATACA
AAGGATGTGTTAGAAGCCGCTGCTACCAAATGGAACTTTCTCAAATTTGAACCAGGTTTAGTAGGAGGACACTGTATCAG
CGTAGACCCTTACTATCTAACATTCAAGGCTCAAGAGTTAGGCCACCATCCAGAGGTAATTCTTTCTGGTAGAAGAGTAA
ACGACGACATGCCAAACTTTGTAGTGCAAAACGTTTTAAAGCTTTTAATAAAAGCAAAAAAACAGATAGAATCCTCAAAA
ATAATCATATTTGGGCTCTCTTTTAAAGAAAACATTCCAGACATAAGAAACTCAAAAGTAGTAGATATATACAACGAACT
TAAAGATTTTGGTATAAATACATACATATACGACCCGTACGTATACAGGGATGAAGTTTTTAAAGAATATGGTATAGAAC
TTTTACAAGACCCTTACGAAGAGGCACCTTACGATGCTGTAATTGTAGCGGTAAAACACAACGCTTTTGGGGAATACGAT
ATAAGATTTTACGAAAATATTACTAAAAGCCCAAAAATTTTGATAGACATAAAAAACTTATACAACAAAGATGTTTTCTT
AAAAAATGGCTTTCTTTATTGGAGCTTATAA

Protein sequence :
MINIEDFINKQESICVVGLGYVGLPLAVTFAKHFNVIGFDINQIRINELKLGIDRTKETTSEELLNSNILFTDNEEYIKK
CKFIIITVPTPIDKHKVPDLKPIFSASVIVGRNLQKDSIVVYESTVYPGLTEEECVPILEKESGLKWKKDFFVGYSPERI
NPGDKIHRFENIVKVVSGDSEYSLNIISGIYSKVVKAGIFKAKSIKVAEAAKVIENTQRDINIALMNELSMIFHKMGIDT
KDVLEAAATKWNFLKFEPGLVGGHCISVDPYYLTFKAQELGHHPEVILSGRRVNDDMPNFVVQNVLKLLIKAKKQIESSK
IIIFGLSFKENIPDIRNSKVVDIYNELKDFGINTYIYDPYVYRDEVFKEYGIELLQDPYEEAPYDAVIVAVKHNAFGEYD
IRFYENITKSPKILIDIKNLYNKDVFLKNGFLYWSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 4e-108 58
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-97 55
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 6e-97 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HY04AAS1_0638 YP_002121303.1 nucleotide sugar dehydrogenase VFG0431 Protein 3e-97 55