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Name : smpB (HY04AAS1_1018) Accession : YP_002121682.1 Strain : Hydrogenobaculum sp. Y04AAS1 Genome accession: NC_011126 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 952481 - 952957 bp Length : 477 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAAAAAACAAGAACAAAATAATACACCAAGGTATGTAAACAAAGAAGGCTTGCATGAAAATGAGGTTGTGGAAACTTA TCAAGCGGGTATTGAGCTTTTAGGACCAGAAATAAAATCCATAAGAAACAAACAAACCGTATCTTTCAAAGATGCTTTTG TTAGGATAGAAAACGGCGAAGCATTTTTACACAACTTATACATAGCTCCTTACAAGTACGCCACTATAAAACCTCCGGAT CCACTTAGAAAGAGAAAGCTACTTCTTCATAAAAGGGAAATTTTGAGGCTTTTAGGAAAATCAAAGGAAAAAGGTTATAC GATAATACCGCTTAGCCTTTACTTTAAAAACGGCAAAGTAAAAGTAGATATAGCTCTTGTCAAAGGTAAAAAACTTTACG ATAAAAGAAAAGAGCTAAAAGAAAAAGATATAAAGAGAGAACTACAAAGAGAGTTTAAAGGGAGAGTAAAGCTCTAA Protein sequence : MKKQEQNNTPRYVNKEGLHENEVVETYQAGIELLGPEIKSIRNKQTVSFKDAFVRIENGEAFLHNLYIAPYKYATIKPPD PLRKRKLLLHKREILRLLGKSKEKGYTIIPLSLYFKNGKVKVDIALVKGKKLYDKRKELKEKDIKRELQREFKGRVKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 9e-20 | 48 |
