|
Name : lysS (HY04AAS1_0997) Accession : YP_002121661.1 Strain : Hydrogenobaculum sp. Y04AAS1 Genome accession: NC_011126 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 932830 - 934539 bp Length : 1710 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGGAAGAATTTAGGAAAAAAAAGTTAGAAGAGCTTGCTAAAAGCCAAAAACACGTCTACAAATATGAATTTGAAAGCCC TTACTTTATTCACGATATAAGAGAGAAATACGAAAAAGAACCAAGAAAAGATAAAATTGTTGTAAAAGCCACCATCAAAA GAGTTTCAAAAGTAGAAGAGGGTTTTGTTTTAAGAATGACTTCAGAAAGTGGCGTTGAAATGCTTGCATATACAAAAGAG ACTTTCGAGCCAAACAAAGCTTACAACATAGAAGGTGTCCTATCAAGGGTAGAAGAAAAATTGAGCCTAATAGATGCAAA ACCCACAGAAGAAACTCCCACCACAAGCATAGATGATATTAAAAAAGAGCACGATTTAGATCCGAACTTTGAAGATATAT CGATAGCTGGAAGGCTTGTGGCCTTGAGAAGCATGGGTAAGGCCATATTTGGACATATACAAGATTTTACTGGGAAATTA CAGATATATATTAAAAAAGATATAGTAGGAGATGAGAAGTTTAAATTTGTAGAAGATTATATAGATGTAGGAGATATAAT AGGCATAAAAGGAAAACTGTTTAGAACGCATACCGGAGAGCTCACCGTAGAAGTTTTTGATATTGAGCTTTTAACAAAAG CCCTAAACAACATGCCAGAAAAATGGCATGGAATAAAAGATATAGAAATAAAGTATAGACAAAGATATTTAGATTTAATA GCCAACGAAAGCTCTAGAAAGGTCTTTACTTTGAGATCAAAGATTATAAAAGCCCTTAGAGATTTCTTTGATAAAAACAA GTTCATGGAAGTAGAAACACCAATTCTTCAGCCAATAGCATCAGGAGCTACCGCAAGGCCTTTTGTTACATATCACAACT ATTTAGAATCTGAGCTTTACCTTAGGATAGCACCAGAGCTTTATCTAAAAAAACTAATAGTGGGCGGTATACCAAGGGTA TATGAGATTGGTAAAAACTTCAGAAACGAAGGCGTAGACACTACGCACAACCCAGAGTTTACCATGGTAGAATTTTACGC TGCTTATTGGGATTATAAAAAACTCATCAAGTTTACCGAAGAGCTGTTTGACTATCTCACAGATATTACCGGTATCAAAA GCATAGAAACTCAAAATGGTGTTATAAACTTAAAGCCTCCTTTCAGAGTAGCTAAGTTTTTTGAGCTTTTAGAAGAAAAA ACATCAAAAGATAAAAGTTTTTTCCTACACCATGAAGAAGAATTGAAGAAGTTTGCCAACGAGCTTGGCATACCAAAAGC TTATACTTTAACAAAACCAAAGCTTATAGAAAAAGTATTTGAATATACAGTAGAAGACGAGCTTATCCAACCTACTTTCA TCATAGATTTCCCGAAAATGCTGTCCCCACTTGCTAAAACCCACAGAGATGACGATGAGTTGGTGGAACGTTTTGAGCTT TATATAAACAAAAAAGAAATAGCAAATGCATACTCAGAGTTAAACGACCCCGAAGACCAAGCCAAGAGGTTTTTAGAACA AAAGCTTCAAAAAGCCACCGGTGACGAAGAAGCTATGGAAACTGATGATGATTTTGTAGAGGCTCTTAGATACGGTATGC CACCCACAGCCGGTGAAGGAATAGGGATAGATAGACTCGTAATGCTCTTTGCAAACGTAGACTCCATAAGGGATGTGATA CTTTTCCCAGCCAACAGAAAGCTAGAATAA Protein sequence : MEEFRKKKLEELAKSQKHVYKYEFESPYFIHDIREKYEKEPRKDKIVVKATIKRVSKVEEGFVLRMTSESGVEMLAYTKE TFEPNKAYNIEGVLSRVEEKLSLIDAKPTEETPTTSIDDIKKEHDLDPNFEDISIAGRLVALRSMGKAIFGHIQDFTGKL QIYIKKDIVGDEKFKFVEDYIDVGDIIGIKGKLFRTHTGELTVEVFDIELLTKALNNMPEKWHGIKDIEIKYRQRYLDLI ANESSRKVFTLRSKIIKALRDFFDKNKFMEVETPILQPIASGATARPFVTYHNYLESELYLRIAPELYLKKLIVGGIPRV YEIGKNFRNEGVDTTHNPEFTMVEFYAAYWDYKKLIKFTEELFDYLTDITGIKSIETQNGVINLKPPFRVAKFFELLEEK TSKDKSFFLHHEEELKKFANELGIPKAYTLTKPKLIEKVFEYTVEDELIQPTFIIDFPKMLSPLAKTHRDDDELVERFEL YINKKEIANAYSELNDPEDQAKRFLEQKLQKATGDEEAMETDDDFVEALRYGMPPTAGEGIGIDRLVMLFANVDSIRDVI LFPANRKLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 5e-93 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002121661.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-93 | 48 |
