Gene Information

Name : SeSA_A0666 (SeSA_A0666)
Accession : YP_002113632.1
Strain : Salmonella enterica CVM19633
Genome accession: NC_011094
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 650260 - 651447 bp
Length : 1188 bp
Strand : +
Note : identified by match to protein family HMM PF00589

DNA sequence : 
ATGAAGCTAACAGCCCGCCAGATCAGTACGGCGAAACCAACGGAGAAACCATATAAGCTGTCTGATGGCGGTGGTTTGTA
TCTGCTGGTTAACCCGAACGGCTCCCGATACTGGCGTATGAAGTATCGCTATGCAGGTAAGGAGAAACTTCTTTCCATTG
GCGTTTATCCTGATGTGACGCTTGCGGAAGCAAGAGACAAACGAACCCAGGCTAAACGTATACTTGCTGCGGGCGATGAT
CCATCTGAAGTAAAACAGGCCGAGAGAGAGGCAAAGAATCTTGCGGTTAATAACAGCTTTGAACTTCTGGCGCTTGAATG
GCATGAGCATAAAAAGCCAAACTGGTCTTCAGGCTATGCTGACGACATTCTTGAATATCTGCGAAAAGACATATTCCCAT
ATATCGGTAAGAAAGCCATAACAGATATTAAGCCGATGACTATGCTCTCCGTGCTGAAAAAAATGGAGGATCGTGGTGTA
CTGGATAAGCTAAAAAAAACTAGGCAAGCCTGCCGACAGATATTTACTTATGCAATTATAACCGGCAGAGCTGAGTTTAA
TCCCGTAACGGATTTAGCTGGAGCGCTGAAAACGCCAAAGCAACAACATTTCCCGCATCTGATGCCAACTCAGATTGGCC
CCTTCATTCATGCTGTTAATACCTACTCAGGCAGTAAAGTAACCCGCATCGCTACGCTATTACTTATGTATACCAGTGTC
AGGACAATCGAGTTAAGGGCTTCTGAATGGACTGAGTTCGACCTGGACAACGATTTGTGGCAGATCCCCAAGGAACGTAT
GAAGATGCGCCGTCCTCACCTTGTACCGCTTTCAAGGCAGGTTAAATCTCATCTGCTGGAACTAAAAAAGATCACTGGTT
GGGGTAAGTATGTTTTCCCCGGTCGCAATGATGCCCACAAGCCAATGAGTGAGGCCAGTATTAATCAGGTGATTAAGCGC
ATAGGTTTTGCAGGAAAGGTCACAGGACACGGATTCAGACACACCATGAGTACCATATTACATGAAAAGGGGTTCAACTC
TGCATGGATAGAAGCACAACTGGCGCACGCTGACAGGAATACTATCCGTGGAACTTACAATCATGCTCAGTACCTTGACG
GTCGACGGGAGATGCTTCAGTGGTACGCTGACTATCTGGATGAGTTGGTTGGAAAAGTGGTGGGTTAA

Protein sequence : 
MKLTARQISTAKPTEKPYKLSDGGGLYLLVNPNGSRYWRMKYRYAGKEKLLSIGVYPDVTLAEARDKRTQAKRILAAGDD
PSEVKQAEREAKNLAVNNSFELLALEWHEHKKPNWSSGYADDILEYLRKDIFPYIGKKAITDIKPMTMLSVLKKMEDRGV
LDKLKKTRQACRQIFTYAIITGRAEFNPVTDLAGALKTPKQQHFPHLMPTQIGPFIHAVNTYSGSKVTRIATLLLMYTSV
RTIELRASEWTEFDLDNDLWQIPKERMKMRRPHLVPLSRQVKSHLLELKKITGWGKYVFPGRNDAHKPMSEASINQVIKR
IGFAGKVTGHGFRHTMSTILHEKGFNSAWIEAQLAHADRNTIRGTYNHAQYLDGRREMLQWYADYLDELVGKVVG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-118 61
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-124 61
int AAC31482.1 CP4-like integrase Not tested LEE Protein 8e-122 60
int ACU09430.1 integrase Not tested LEE Protein 8e-122 60
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-121 60
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-121 60
int CAC39282.1 integrase Not tested LPA Protein 2e-122 59
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-122 59
int AAD44730.1 Int Not tested SHI-2 Protein 2e-121 59
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-121 59
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-121 59
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-121 59
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-70 44
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 8e-75 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 9e-75 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 8e-75 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-75 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-75 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-75 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-75 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-74 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-72 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-72 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeSA_A0666 YP_002113632.1 integrase VFG0783 Protein 5e-122 60
SeSA_A0666 YP_002113632.1 integrase VFG0598 Protein 2e-121 59
SeSA_A0666 YP_002113632.1 integrase VFG1693 Protein 4e-75 41