Gene Information

Name : SeSA_A0374 (SeSA_A0374)
Accession : YP_002113350.1
Strain : Salmonella enterica CVM19633
Genome accession: NC_011094
Putative virulence/resistance : Unknown
Product : site-specific recombinase, phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 379241 - 380431 bp
Length : 1191 bp
Strand : +
Note : identified by match to protein family HMM PF00589

DNA sequence :
ATGATGCTGAATGCCCGTAAGGTTGAAGCCGCCAAAGGAAAAGAGAAGAGCTATAAGCTCGCTGATGGCGGCGGCCTGTA
TCTTCAGGTAGAACCCAATGGTTCACGATATTGGCGAATGAAGTATCGCTTCGCGGGTAAAGAAAAACGCCTATCTTTTG
GCGTCTATCCAGCTGTCAGCCTTGCTGATGCTAGGCAAAAGCGCGAAGACGCAAAGAAATTACTCGCAGCAGGTAACGAT
CCTGGCGAAGTAAAGAAAGCGAAGAAGCTGGCTTTGACCTCTGCCACTGAGATAGTCAACCCGTTCAAAGAGGTCGCGTT
AGAGTGGCACAAAATGAAGTCACCAAAATGGTCAAAGGGCTACGCTTCCGACATCCTTGAGGCCTTCGAGAAGGATATCT
TTCCCCATATTGGGCAACGACCTATTGCGGATATTAAACCCCTCGAACTACTAGAAGTGCTGAGACTGATAGAAGCCAGA
GGTGCGATGGAAAAAGCGAAGAAAGTCCGCCAGCGATGTGGAGAAGTTTTCCGTTATGCCATCGTAACAGGGCGAGCAAT
TTACAATCCTGCACCGGATCTCGCCAGCGCAATGCAGGGCCATGAAGCCGTCCATTATCCTTTCCTTAAAGCCACCGAAT
TACCCGAGTTCTTTACCGCCCTGAATGCCTATACAGGAAGCCCGATTGTTGTGCTGGGAGCACATTTACTTATCCTGACA
GGACTGAGAACGGGTGAGCTACGCGCCGCTGAATGGTGTGAAATTGATTTTGATAACGCTCTTTGGGAAATACCAAAAGA
ACGCATGAAAATGCGTCGTGCGCATCTTGTGCCGCTTTCAAATCAAGCATTAGCCCTTCTTGAAACCTTAAAAGAACTGA
CTGGAAACTATCCTTTGATGTTTCCTGGGCGTAACGATCCTAGCAAATCTATGAGTGAAGCAAGCATTAATCAGGTGTTT
AAACGTATTGGATATGCAGGGCGTGTTACGGGGCATGGTTTCAGGCATACGATGAGTACGATTCTACATGAGAAAGGATT
TAACAGCGCTTGGATTGAAACCCAGCTTGCTCATTTGGACAAAAATTCTATTCGTGGAATTTATAACCATGCCCAATATC
TCGAAGGGCGAAGAGAAATGATGCAATGGTATGCTAATTATTTATCTGAGCTGGTTGGTAATCATAAATGA

Protein sequence :
MMLNARKVEAAKGKEKSYKLADGGGLYLQVEPNGSRYWRMKYRFAGKEKRLSFGVYPAVSLADARQKREDAKKLLAAGND
PGEVKKAKKLALTSATEIVNPFKEVALEWHKMKSPKWSKGYASDILEAFEKDIFPHIGQRPIADIKPLELLEVLRLIEAR
GAMEKAKKVRQRCGEVFRYAIVTGRAIYNPAPDLASAMQGHEAVHYPFLKATELPEFFTALNAYTGSPIVVLGAHLLILT
GLRTGELRAAEWCEIDFDNALWEIPKERMKMRRAHLVPLSNQALALLETLKELTGNYPLMFPGRNDPSKSMSEASINQVF
KRIGYAGRVTGHGFRHTMSTILHEKGFNSAWIETQLAHLDKNSIRGIYNHAQYLEGRREMMQWYANYLSELVGNHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-166 91
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-121 64
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-121 64
int ACU09430.1 integrase Not tested LEE Protein 2e-121 64
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-121 64
int AAD44730.1 Int Not tested SHI-2 Protein 6e-121 63
int CAC39282.1 integrase Not tested LPA Protein 8e-122 63
aec33 AAW51716.1 Int Not tested AGI-3 Protein 7e-122 63
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-121 63
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-121 63
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-121 63
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-119 62
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-69 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-70 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-70 43
intA AAB00935.1 integrase A Not tested vap locus Protein 1e-53 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-68 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-70 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-70 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 9e-71 41
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-66 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-70 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-70 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-70 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-70 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-70 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-70 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-70 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-70 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 9e-71 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-69 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 9e-71 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-70 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 8e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeSA_A0374 YP_002113350.1 site-specific recombinase, phage integrase family protein VFG0783 Protein 1e-121 64
SeSA_A0374 YP_002113350.1 site-specific recombinase, phage integrase family protein VFG0598 Protein 2e-121 63
SeSA_A0374 YP_002113350.1 site-specific recombinase, phage integrase family protein VFG1536 Protein 7e-67 41
SeSA_A0374 YP_002113350.1 site-specific recombinase, phage integrase family protein VFG1693 Protein 6e-71 41