|
Name : SeSA_A3045 (SeSA_A3045) Accession : YP_002115844.1 Strain : Salmonella enterica CVM19633 Genome accession: NC_011094 Putative virulence/resistance : Virulence Product : antigen presentation protein SpaN Function : - COG functional category : - COG ID : - EC number : - Position : 2942442 - 2943452 bp Length : 1011 bp Strand : - Note : identified by match to protein family HMM PF02510 DNA sequence : ATGGGCGATGTGTCAGCTGTCAGTTCATCCGGGAACATTTTACTGCCGCAGCAGGATGAGGTTGGCGGTTTATCAGAAGC ATTAAAAAAAGCGGTGGAAAAACATAAGACAGAATATTCCGATCATAAAAAAGATCGCGACTATGGCGATGCTTTCGTAA TGCATAAAGAAACGGCTTTACCGGTATTGCTGGCGGCATGGCGACATGGCGCGCTAGCGAAATCAGAACATCACAATGGC AACGTTTCTGGTCTGCATCATAACGGAAAAGGCGAACTCAGGATTGCTGAAAAACTGTTGAAAGTCACTGCTGAAAAATC TGTCGGTTTGATCTCTGCGGAGGCCAAAGTAGATAAATCCGCAGCGTTGCTATCGTCTAAAAATAGGCCGTTAGAAAGCG TAAGTGGTAAAAAATTATCTGCTGATTTAAAAGCTGTGGAATCCGTTAGTGAAGTAACCGATAACGCCACGGGAATCTCT GACGATAATATCAAGGCATTGCCTGGGGATAATAAAGCCATCGCGGGTGAAGGCGTTCGTAAAGAGGGCGCGCCGCTGGC GCGGGATGTCGCATCTGCCCGAATGGCCGCAGCCAATACCGGTAAGCCTGACGATAAAGATCATAAAAAGGTTAAAGATG TTTCTCAGCTTCCGCTGCAACCAACCACTATCGCCGATCTTAGCCAATTAACCGGCGGCGATGAAAAAATGCCTTTAGCG GCGCAATCAAAGCCGATGATGACTATTTTTCCCACTGCCGATGGCGTGAAAGGGGAGGATAGCTCACTGACTTACCGTTT TCAGCGCTGGGGAAATGACTATTCCGTCAATATTCAGGCGCGGCAAGCAGGGGAGTTTTCGTTAATACCGTCAAATACGC AGGTTGAACATCGTTTGCATGATCAATGGCAAAACGGTAATCCCCAGCGCTGGCACCTGACGCGAGACGATCAACAAAAT CCGCAGCAGCAACAGCACAGACAGCAATCTGGCGAGGAGGATGACGCCTGA Protein sequence : MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSDHKKDRDYGDAFVMHKETALPVLLAAWRHGALAKSEHHNG NVSGLHHNGKGELRIAEKLLKVTAEKSVGLISAEAKVDKSAALLSSKNRPLESVSGKKLSADLKAVESVSEVTDNATGIS DDNIKALPGDNKAIAGEGVRKEGAPLARDVASARMAAANTGKPDDKDHKKVKDVSQLPLQPTTIADLSQLTGGDEKMPLA AQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQARQAGEFSLIPSNTQVEHRLHDQWQNGNPQRWHLTRDDQQN PQQQQHRQQSGEEDDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| invJ | YP_217811.1 | surface presentation of antigens; secretory proteins | Virulence | SPI-1 | Protein | 4e-132 | 99 |
| spaN | NP_457286.1 | surface presentation of antigens protein (associated with type III secretion and virulence) | Virulence | SPI-1 | Protein | 4e-131 | 98 |
| spaN | NP_806495.1 | antigen presentation protein SpaN | Virulence | SPI-1 | Protein | 4e-131 | 98 |
| invJ | NP_461813.1 | needle length control protein | Virulence | SPI-1 | Protein | 8e-132 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeSA_A3045 | YP_002115844.1 | antigen presentation protein SpaN | VFG0553 | Protein | 4e-132 | 98 |
