Gene Information

Name : SeSA_A0025 (SeSA_A0025)
Accession : YP_002113033.1
Strain : Salmonella enterica CVM19633
Genome accession: NC_011094
Putative virulence/resistance : Virulence
Product : outer membrane usher protein FimD
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 25762 - 28428 bp
Length : 2667 bp
Strand : +
Note : identified by match to protein family HMM PF00577

DNA sequence :
TTGGCGCAACGACGCCAGCACGCGTTTGTCCAGCTTCATGATGTTATGCGTAATCAGCTTTTCATGACGCGATATTACTC
CAGCGTAGCTAAACCCGTATTAACCCCGCTGGCGTTGGCTATCGCATTGGCGCCTGCGCCGGGGTGGGCGGAAAACTATT
TCAACCCGGCATTTCTGTCTGACGACCCGTCTGCGGTGGCCGACTTATCGACCTTTTCCCGTAATGCCCAGGCGGCGGGA
ATGTATCGCGTTGACGTTTACCTGAACAATACGTTTCTCGCGACCAGAGACATTGCCTTCCAGGCGGTGAAAACGACGGG
AAAAAGCGCGCCCACCGATGACAGCGGATTACGCGCCTGCCTGACGCCTGAAATGCTTAAAAATATGGGGGTAAACACCG
GGGCGTTTCCACTGTTGGCGAAGGCGGCGGCGGGAAGTTGCCCGGATCTCGCCAGTGCGATACCGGCCGCCCGGACCCGC
TTTGATTTTGCGCAGCAACGTCTCGACATTAGCATCCCGCAGGCGGCGATGGTTGCCAGCGCCAGAGGCTATATCCCACC
GCAATACTGGGATGAAGGTATTAACGCGTTGCTATTGAATTACACCTTTACCGGCGCGAATAGTCAGGATCGGAGCGCAG
GCGGCAGTGCGGAGAACAGCTATTTTCTTGGATTGAATAGCGGCCTTAATCTGGGGGCCTGGCGGTTACGCGACTACTCC
ACATGGAACGCGAATAGCGGCGATCAGAATAGCGACAGCGACTGGCAGCACATCAGTACTTATCTGGAACGTGATGTGGT
CTTTTTGCAGGGAGAACTGACGGCAGGCGATAGTTATACCCCCTCCGCATTATTCGACAGCATTCCTTTTCGCGGGCTAC
AACTGGCGTCTGACGACAATATGTTGCCAGACAGCATGAAAGGCTTCGCGCCGACCATTCACGGCATTGCCAGAAGCAAC
GCGCAAGTGACCATTCGGCAAAACGGCTACATCATCAATCAGCGCTATGTGCCGCCCGGGGCATTTACTATTAATGATCT
CTATCCCACCGCCGCCAGCGGCGATTTGACTGTGGAAGTCAAAGAGTCTGACGGTTCTATTAATCGCTATAACGTGCCCT
ATTCCGCCGTGCCGATTCTACAACGAGAAGGGCGGCTGAAGTATGCGGCGACGGTGGCGGAGTATCGTAGCGATAGTAGT
CAAAAAGAGAAGGTGAAATTCACTCAGGCGACCTTGATATGGGGGTTACCGCATGGTTTTACGCTGTATGGCGGAACACA
ACTTTCCAGTCATTATCACGCGCTGGCGATCGGCAGCGGCGCAAATCTGGGCGACTGGGGCGCGGTGTCGCTGGATGTCA
CCCAGGCTACCAGTACGCTGGCGGATAATAACACCTACCAGGGGCAATCGCTGCGTTTCCTGTATGCCAAATCGCTTGCA
CAGTCAGGAACCAATTTACAGCTTATGGGCTATCGCTATTCAACCTCGGGCTTTTATACGCTGGATGATACCACGTGGAA
ACGGATGAGCGGCTATGACGATGACAGTCGGACTGACAGCGATAAAAGCAGGCCGGAATGGGCGGATTATTACAATCTTT
ATTATACCAGAAGGGGGAAAGTACAACTCGATATCAATCAACAGCTAGGCGGGTTGGGATCGCTTTTTATTACCGGCAGT
CAACAAAGTTACTGGCACACTGATGAAAAGGATTCTTTGTTGCAGGTGGGATACAGCGATACGCTGGCGGGTATTGCATG
GAGTGTTTCTTATAACAATAACAAATCCGCAGGCGATGCGGAGCGCGATCAAATTTTCGCGCTGAATATCTCGGTGCCGC
TAAGTCAATGGCTGCAACACGATGATGAGGTTACGCGCCATCACAATGTTTACGCTACCTTTAGCACCAGTACGGACAAA
CAGCATAACGTTACGCAGAATGCGGGCCTTAGCGGCACACTGCTGGACGAAAACAATCTTAGTTACAACATACAGCAAGG
TTATCAAAATCACGGTATTGGCGAAAGCGGCTCCGCCAGCCTGGAATACGATGGGGCGAAAGGCAACGCCAACATTGGCT
ATAACGTTAGCGATAACGGCGATTACCAGCAGGTGAATTATGGCCTGAGCGGCGGCCTGGTGGCGCACGTGCATGGAGTG
ACGCTAAGCCAGCCGCTGGGCAATACCAATATTTTGATTGCCGCGCCGGGCGCAGCCAACGTCGGCGTTGTCGACCAGCC
GGGTATTCATACGGACGCGCGTGGCTATGCGGTGGTGCCGTATGCGACGACATATCGCCAAAACCGTATGGCGCTGGACG
TTAACGCGATGGCTGATGATGTCGATATTGATGACGCGGTGACTCGCGTTGTGCCGACCGAAGGCGCGCTGGTTCTGGCC
CGCTTTAAAGCGCGAGTCGGCGCGCGTGCCCTGGTAACGCTGAATCATAACGGTAAGCCTGTACCCTTTGGCGCAACGGT
GACGGTGAATGATCGTCATGCGGAGGCGATTGTTGACGAGGCCGGGGAAGTCTATCTTTCCGGGTTGTCAGCGCAAGGCA
TTCTGCACGTTCGCTGGGGGAACCTGCCGGATCAACAGTGTGTCGCGTCCTATCATCTCTCTTCCTCCCGTCAGATTCTG
AGTCGACAACATGCGGAGTGTCATTAA

Protein sequence :
MAQRRQHAFVQLHDVMRNQLFMTRYYSSVAKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAG
MYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTR
FDFAQQRLDISIPQAAMVASARGYIPPQYWDEGINALLLNYTFTGANSQDRSAGGSAENSYFLGLNSGLNLGAWRLRDYS
TWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSIPFRGLQLASDDNMLPDSMKGFAPTIHGIARSN
AQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSS
QKEKVKFTQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLA
QSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGS
QQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDK
QHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGSASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHVHGV
TLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLA
RFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGILHVRWGNLPDQQCVASYHLSSSRQIL
SRQHAECH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 51
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeSA_A0025 YP_002113033.1 outer membrane usher protein FimD VFG0876 Protein 0.0 52
SeSA_A0025 YP_002113033.1 outer membrane usher protein FimD VFG1645 Protein 0.0 50
SeSA_A0025 YP_002113033.1 outer membrane usher protein FimD VFG0912 Protein 0.0 50
SeSA_A0025 YP_002113033.1 outer membrane usher protein FimD VFG0446 Protein 1e-178 49
SeSA_A0025 YP_002113033.1 outer membrane usher protein FimD VFG0454 Protein 4e-163 43