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Name : SeSA_A0194 (SeSA_A0194) Accession : YP_002113194.1 Strain : Salmonella enterica CVM19633 Genome accession: NC_011094 Putative virulence/resistance : Virulence Product : outer membrane usher protein FimD Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 203973 - 206519 bp Length : 2547 bp Strand : - Note : identified by match to protein family HMM PF00577 DNA sequence : ATGCGCAAAGGGCAACACAGGGGATTTTATTTATCGCGCTGCGCTGTGTGTATCGCGCTGGGCAGCACGTTCGCACATGT TGCATGGGCGCGCGACTATTTCAATCCGGCATTTATTGAACACCATGGGCAGGCGAATCGCACAAGCGTCGATCTGTCGA CATTTGATAACGACAAAAGCCAACTTCCTGGCACCTATTACGTCACTATCATTATCAACAAAACAGAAATCGGCGCGCGA AACGTTGATTTTCAACTCACGACGCTCAGTGACGGTCAACAGGCATTACAGGGCTGTTTACGGCTTCAGGAACTAAAAGA TAACGGCGTCAAAACCGACCTTTTTCCAACGCTGGAGAGTGAAAAAGGCTGCGTCGATCTCAGCGCTATCCCCGGCGCCA GCCAGCAGTTTGATTTTCAGCAACAGGCATTATCGATAAGCATCCCTCAACTCTACATCGCCAACAACGCGCGCGGCTAC GTGCCGCCGGAAAAGTGGCAGGAGGGGATTACCGCGCTAATGCTGAACTACAGTTTCAGCGGCTATAAAGAGTACGGTTC CAGTGACGATTCCGACGATGCGGAATCGAAGTATCTCGCTCTCCAGCCGGGTTTTAACCTCGGGCCGTGGCGTTTTCGCA ACTACAGTAACTGGAGCGCAAATAACGGCGAGAGCGGTAGCTGGAACAGCGTTTATAACTATTTACAGCGCGACATTATC GCGCTGAAAAGCCAGTTCACCGCCGGAGACAGCAATACGCCATCCGACGTGTTCGACAGCGTACCTTTTCGCGGCCTCCA GCTCACCTCTGACGATCAAATGCAGCCCAACAGCCAGCGTGGTTACGCCCCGACGATTCGCGGCATCGCCCGTTCAAACG CGCAGGTTATCGTGCGGCAAAACGGTTATATCGCCTATCAAACTGCCGTTTCGCCGGGCGAATTTGAAATCAACGATATG TTTCCCACCGGCAGCAACGGCGACTACGACGTGACGGTAAAAGAAGCCGACGGTAGCGAACAGCATTTTATCGTGCCCTA CTCTTCGCTGCCGATTCTGCAGCGCACCGGACGGGCAAAATACAGCGTGACCGTGGGTAAATATCGTGATTACGACAACC ACACGCTGGACGACTTCGGCCAGGCGACCCTGCTGTACGGCCTGCCGTGGGGTATCACGCTGTACGGCGGCAGCCAGATT GCCGGCGATAAATACCAGTCCGTCGCCTTCGGCGTCGGGCAAAATATGCAGATGCTGGGGGCCATTTCCCTGGACGGTAT CTGGTCGCACGCCAAATTTGACGATGGCCGCAAAGAAGCCGGGCAATCCTGGCGCGTCCGCTACAGCAAGGGCGTCGTCA GTACGGGCACCACGTTTTCGCTGGCCGGCTATCGTTACGCCAGCGAAAACTACAATTCGCTGAGCGAGGTGATCAACCCG GACGACGATTTTTATGATAACTACGGCAAGCGCCATAATCGTTTCGAAGCTTCAGTCAACCAGCAAATTAGCGATACGCT CGGTTCCTTAACGCTAAGTTGGGTAAAAGAAGATTACTGGCACAGCGCGCAGCAGATGGAATCTCTGAGCGCCAACTACA ACAATAGCTGGGGCCCGGTGAGCTATACGTTAAGCTACAGCTATAACAAAAACACCTACCAGTACCGATCGGATAATGAC GATGATGATAACGACGACGATCGTTATAACCAGAACGATCGGCTGTTCACGCTGTCGCTGCATGTTCCGTTTACGGTGTT CGATTCCAGGCTATACGCCAGCTATATGCTGAACACGCGTAAGCACGATGCTACGGTGAACAGCACCACCCTTAGCGGCA CCGCGCTGCGTGACAGAAACCTGAACTGGTCGTTACAGCAGAGCCACAGCACACAAGACGGTGATTCCGGCGGGGTAAAC GCCAGCTACAAAGGCACTTATGCCAACCTCAACGCCGGTTACAATCAGTCGCCAGATAGCCAACAGGTCAGCTACGGCAT CAGCGGCGGCATTCTGGCGCACGAAAACGGTATTACCCTGAGCCAGCCGATTACCGGCGCGGCGATTTTAATTAAAGCGC CCGGCGCCAGCGGCGTTTCAGTTGAAAACCAGACCGGCGTCGCCACCGACTTCCGGGGTTATACGGTGATCCCCAACGTC ACTCCGTATTATCGCTACGATATCTCGCTCGACAGCAGCACGTTTGCCGACAACGTGGATATTCCGCTCAACAACCAGAC CGTCTACCCGACGCGTAATGCGGTGGTGCGCGCGGCGTATGACACGCATAAGGGCTATCGCGCGCTGTTAACGCTGACGC GCAGCAATGGCGAGCCCGTGCCCTTTGGCGCGACGGCAAGCGTCGATGGGCAGGATGCGAACCTGGCCAGTATCGTCGGC GATAAAGGCCAGGTCTTCCTCAGCGGCCTGCCGGAAGAGGGCCTGCTCCTGGTGAACTGGGGAAGCGCCTCTTGCCGCGC GGATTACCGTCTGGATATCAGCAAAAATATGAACGGCATAGTGATGGCGAACGCCGTCTGCCAGTGA Protein sequence : MRKGQHRGFYLSRCAVCIALGSTFAHVAWARDYFNPAFIEHHGQANRTSVDLSTFDNDKSQLPGTYYVTIIINKTEIGAR NVDFQLTTLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSAIPGASQQFDFQQQALSISIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSDDSDDAESKYLALQPGFNLGPWRFRNYSNWSANNGESGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYDNHTLDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEAGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISDTLGSLTLSWVKEDYWHSAQQMESLSANYNNSWGPVSYTLSYSYNKNTYQYRSDND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRALLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 2e-137 | 41 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 1e-129 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeSA_A0194 | YP_002113194.1 | outer membrane usher protein FimD | VFG0454 | Protein | 5e-146 | 42 |
| SeSA_A0194 | YP_002113194.1 | outer membrane usher protein FimD | VFG1645 | Protein | 7e-130 | 41 |
| SeSA_A0194 | YP_002113194.1 | outer membrane usher protein FimD | VFG0912 | Protein | 7e-131 | 41 |
