Gene Information

Name : SeSA_A1272 (SeSA_A1272)
Accession : YP_002114201.1
Strain : Salmonella enterica CVM19633
Genome accession: NC_011094
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 1244737 - 1245414 bp
Length : 678 bp
Strand : -
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGAATAAATATAGTTTACTCACTGCCGCCACGCTTATATTCACTACGGCAACCGTACAGGCCGGTGTTATTATCGGCGG
AACCCGTATTATTTATAACGGCGATAAAAAAGAAACGTCGATTAGCGTTAAAAATCCGGACCAATCTTCTTATCTCATTC
AGTCATGGAGTGACGCCGGGGAAAAAAGCAGCGATAAATCGCCGTTTATGGTCACGCCGCCGCTTTTTCGTTTAGGCGCA
GGGCAGGAAAATAATCTGCGAATTCTCCGTACTGGCGGCAATTTGCCGGAAGATCGTGAGTCCCTCTACTGGATGAATAT
TAAGTCGATCCCATCGACGACAGAAAAGCAGGATAACGTTAACACTCTGCAAATTGCGGTGAAAACCCGCATTAAATTAA
TTTACCGTCCGCAGGCGTTGACGGAGCAACCGGAAAACGTCACCGCGAAGCTGACCTGGCAGCACAGCGGTAACCGTCTT
ACCGTGACCAATCCCACAGCCTACTACATGAACTTCAGCACGGTGAAGATAGGAACCAGCACCGTGAAAGACGCTACCTA
TGTCGCGCCGATGAGTTCCGCCAGCTTTACCGCGCCCGCCGAAGCCAGCGGCGACGTAACCTGGACACTTATTAACGATT
TCGGCTCTATCGGGTCTGAACACCACACACGCCTGTAA

Protein sequence : 
MNKYSLLTAATLIFTTATVQAGVIIGGTRIIYNGDKKETSISVKNPDQSSYLIQSWSDAGEKSSDKSPFMVTPPLFRLGA
GQENNLRILRTGGNLPEDRESLYWMNIKSIPSTTEKQDNVNTLQIAVKTRIKLIYRPQALTEQPENVTAKLTWQHSGNRL
TVTNPTAYYMNFSTVKIGTSTVKDATYVAPMSSASFTAPAEASGDVTWTLINDFGSIGSEHHTRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 5e-40 43
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 2e-36 41
afaB AAK16197.1 AfaB Virulence PAI-I AL862 Protein 2e-34 41
afaB ADD91742.1 putative AfaB-VIII periplasmic chaperone Not tested PAI-I AL862 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeSA_A1272 YP_002114201.1 chaperone protein FimC VFG0875 Protein 2e-40 43
SeSA_A1272 YP_002114201.1 chaperone protein FimC VFG0911 Protein 1e-36 41
SeSA_A1272 YP_002114201.1 chaperone protein FimC VFG1644 Protein 1e-36 41
SeSA_A1272 YP_002114201.1 chaperone protein FimC VFG0943 Protein 1e-32 41