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Name : SeSA_A1271 (SeSA_A1271) Accession : YP_002114200.1 Strain : Salmonella enterica CVM19633 Genome accession: NC_011094 Putative virulence/resistance : Virulence Product : outer membrane usher protein SfmD Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 1242158 - 1244713 bp Length : 2556 bp Strand : - Note : identified by match to protein family HMM PF00577 DNA sequence : ATGAATGCAGACGCATACAAAAAAATAATGACGCTCAGTCGAATCGCCTGCTTTATCGCCCTGCAGTGCGCACTGCCAGC CGGTAACACTGCGTTTGCCCGCGAATATTTTAACCCAGCGCTGCTGGGGATCGACGGGCCGGGAAAAGAGCTTACCGATC TTTCCGCTTTTGAAGAAGGCATCGGCCAAATGCCTGGCACCTATCGCGTTGACGTCATTGTGAATAAATCGTCCGCTGGC GTGCATGACGTTAATTTTGTTATGCAAAAAGATACGGCAGGCAACACCACTCTGCAGCCCTGCTTCAGCGTTGACTCGCT GCGCGAGTTCGGTATTCGTACCGACGCGTTTCCAAATCTTGCTGGTCACGGCGACTGCGCTAACCTGGCGGCGATCCCGC AGGCCAGCGCCGAGTTCGCCTTTGAACGCCAGCAGCTACGGCTGTCTATTCCGCAGGCCGCCGTAGACAGCCATGCCCGC GGCTACGTCGCCCCGGAACGGCTCGATGAGGGCATTAACGCCCTGCTGCTCAACTATAGCTTTTCCGGCGCCAACACCGA AGCGCGCCGCGGCGATATGACCGACTCCGACAGCTATTATCTGAGCCTGCGTCCGGGCCTGAATATTGGCCCCTGGCGCA TTCGCAACTACAGCACCTGGAATCGCAACGTCAACGGCGATAGCGCCGATGAAAGCTGGGATTCGCTCTACACCTACGCC CAACGCAATATTATCGCGCTGAAAAGTCAGCTAACATTCGGCGACAGCACCGCGCCCTCCGAGCTGTTTGATAGTGTGCC GTTCCGCGGCGCACAGCTGGCCTCCGACGATGATATGTTGCCCGATAGCCTGCGTGGCTACGCGCCGGTGGTGCGCGGCA TCGCCCGTACTAACGCGCAGGTAATTATCAAACAGAATGGTTACACCATTTATCAAAGCTATGTTTCGCCGGGCGCATTT GAGATTACCGATATGTACCCAACCGGCAGCAGCGGCGATCTTGACGTCACAATTAAAGAGGCCGACGGTAGCGAACAGCA TCAGACGGTGGCCTTCGCCTCTCTGCCTATTCTGCAGCGCGAAGGGCGGCTGAAGTACAGCGTGACCAGCGGCCAGTATC GCCCCTATGAGAGCGATATTGACAAAAAAATGTTTACCCAGGCCACCCTGATTTATGGCCTGCCAGCCGGGTTTACGGTA TATGGCGGGGGCCAGTTCTCACAGCACTACAAGTCCCTGCTCACCGGGCTTGGAAAAAACCTCGGCGAGTTGGGTGCCGT CTCGGTGGATGGCACTCAGGCATGGTCAACGCAAAAAGATCAGGATAAAGAGAGCGGCCAGTCCTGGCGCATCCGTTACA GTAAAAATATTCTCGAAACCGGCACCAATATATCCATTTCCGGTTATAGGTATTCAACATCAGGTTATTACACTCTCCCG GAAGTACTGGATACCTGGCGTGACGACGAGTCGCAAAATAATAACGACCGCCGCCGCAACCGTGCTGAACTTCAGCTTAA CCAGAGTATCGGGGCGAGTCTGGGGTCACTGTCGCTCAATGCTATTAGCGAAGATTACTGGAACAGTGACCGGAAGATGC GCTCTCTCGGTGTGGGTTACAGTAATAGCTGGGGCGGCGTGACGTACAACATCAATTACAGCTATAACCGCAATACCACC GACAGTGACGATAGCGACAAAATCTACGATGAAGATCAGGTCTTCTCACTGAGCATAAACATCCCGCTCGACCGCTGGTT AAGTCACAGTTACGCCACCTACAACCTGAATACTAGCAAACGGGGCAATACCAACCATACCGTCGGGCTAAACGGGTCAG CATTAGAAGACAATAACCTGAACTGGAGTCTCCAGCAGAGCGAAACGAATCACGGCGAAGGGAATGGCGGTTACGCCAGC CTCGATTATCAGGGGGCCTACGCACGAATGAATGGTGCCTACAGCTATGACAACGACCAGAAACGCGTTAACTACGGCAT GGAAGGCGGCATTGTCGCGCACGCGCATGGTGTCACGCTCAGCCAGTCGTTGGGCGAAACCTCAGCACTGGTAGAAGCCC CCGGGGCGAATGGTGTTACGATAAGCAACCAGACGGGTGTAAAAACCGACTTCCGCGGTTACACCGTGGTGCCTTACGTA ACGCCGTACCGTGAAACCGCCGTCTCACTGGATACCGAAACGCTGCCTGATGGTGCTGACGTCGACCTGACCAGCCAGAT GATTACTCCCACGCGCGGCGCAATTGTACGCGCACATTTTGATACCCGTATCGGTAAAAGGGTACTCATGAATTTGTCAC GTACCCCTACGGAGATAGTGCCATTTGGAGCGCTGGCAACGATAGAGGGTCAACCTGCGGATAAGAGCTTCATCGTGGGT GACCACGGGCAAGTCTATCTTACCGGTGCGCCCGAACGCGGAACCTTAAAGGTAACGTGGGGCCGTACGGCGAATGACAC CTGTCACGTAACATTCAATTTAACAGAATTGAATGCGACTGATGGTGTGATGGAAACGCAAGAATCTTGTCGTTAA Protein sequence : MNADAYKKIMTLSRIACFIALQCALPAGNTAFAREYFNPALLGIDGPGKELTDLSAFEEGIGQMPGTYRVDVIVNKSSAG VHDVNFVMQKDTAGNTTLQPCFSVDSLREFGIRTDAFPNLAGHGDCANLAAIPQASAEFAFERQQLRLSIPQAAVDSHAR GYVAPERLDEGINALLLNYSFSGANTEARRGDMTDSDSYYLSLRPGLNIGPWRIRNYSTWNRNVNGDSADESWDSLYTYA QRNIIALKSQLTFGDSTAPSELFDSVPFRGAQLASDDDMLPDSLRGYAPVVRGIARTNAQVIIKQNGYTIYQSYVSPGAF EITDMYPTGSSGDLDVTIKEADGSEQHQTVAFASLPILQREGRLKYSVTSGQYRPYESDIDKKMFTQATLIYGLPAGFTV YGGGQFSQHYKSLLTGLGKNLGELGAVSVDGTQAWSTQKDQDKESGQSWRIRYSKNILETGTNISISGYRYSTSGYYTLP EVLDTWRDDESQNNNDRRRNRAELQLNQSIGASLGSLSLNAISEDYWNSDRKMRSLGVGYSNSWGGVTYNINYSYNRNTT DSDDSDKIYDEDQVFSLSINIPLDRWLSHSYATYNLNTSKRGNTNHTVGLNGSALEDNNLNWSLQQSETNHGEGNGGYAS LDYQGAYARMNGAYSYDNDQKRVNYGMEGGIVAHAHGVTLSQSLGETSALVEAPGANGVTISNQTGVKTDFRGYTVVPYV TPYRETAVSLDTETLPDGADVDLTSQMITPTRGAIVRAHFDTRIGKRVLMNLSRTPTEIVPFGALATIEGQPADKSFIVG DHGQVYLTGAPERGTLKVTWGRTANDTCHVTFNLTELNATDGVMETQESCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 1e-139 | 42 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 5e-138 | 41 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 5e-138 | 41 |
| afaC | AAD44022.2 | AfaC | Virulence | PAI-I AL862 | Protein | 4e-140 | 41 |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 2e-142 | 41 |
| afaC | ADD91743.1 | putative AfaC-VIII usher protein | Not tested | PAI-I AL862 | Protein | 4e-141 | 41 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 2e-143 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeSA_A1271 | YP_002114200.1 | outer membrane usher protein SfmD | VFG0454 | Protein | 5e-165 | 46 |
| SeSA_A1271 | YP_002114200.1 | outer membrane usher protein SfmD | VFG0944 | Protein | 4e-147 | 42 |
| SeSA_A1271 | YP_002114200.1 | outer membrane usher protein SfmD | VFG0446 | Protein | 4e-141 | 42 |
| SeSA_A1271 | YP_002114200.1 | outer membrane usher protein SfmD | VFG0853 | Protein | 3e-145 | 41 |
| SeSA_A1271 | YP_002114200.1 | outer membrane usher protein SfmD | VFG0876 | Protein | 4e-145 | 41 |
| SeSA_A1271 | YP_002114200.1 | outer membrane usher protein SfmD | VFG1645 | Protein | 1e-143 | 41 |
| SeSA_A1271 | YP_002114200.1 | outer membrane usher protein SfmD | VFG0912 | Protein | 5e-144 | 41 |
