Gene Information

Name : SeHA_C0655 (SeHA_C0655)
Accession : YP_002044580.1
Strain : Salmonella enterica SL476
Genome accession: NC_011083
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 653735 - 654448 bp
Length : 714 bp
Strand : +
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGCAAAAGGTATTTTTTACCATGCTGAATAGTATAAAAGTAGGCTTTATTGTTCTTCTCACGTTATTTACTTCGCTGAA
CGTACAGGCGGCGGGGGGGATTGCATTAGGCGCCACGCGCGTTATTTATCCCTCGGCGGCGAAGCAGACTTCTCTGGCAA
TCAGTAATAGCGATACTCAAGAACGTTACCTCGTCAATTCATGGATCGAAAATAACGCTGGGCAGAAAGAAAAAACGTTT
ATCGTTACGCCGCCTTTATTCGTCAGCGAGCCCAAAAGTGAAAACACGCTGCGTATTATCTACGCCGGGCAACCGCTACC
CGGGGATCGGGAGTCGTTATTCTGGATGAACGTGAAAGCCATCCCGTCGGTCGATAAAAGTCATATTGAAGGAAAAAACG
TTCTGCAACTGGCGATTCTGTCGCGCATCAAACTGTTCGTGCGTCCGGCGAATTTGCCGCAGACGCCGGAAGACGCGCCG
ACCTTGCTGAAATTTTCCCGTGTCGGCAACCATCTCAAGATAACCAACCCATCTGCTTATTACCTCACGCTGGTCAATAT
CAGCGTGGGCGCGAAAAAGATTGATAACGTGATGATCGCGCCAAAAAGCGACATGCAAATTCCCTTACCGACTGGCGCGC
AGGGCAACGTGACATTTCAGTCCGTCAATGATTACGGCGCATTGACGTCGGCGACAACGGCCAGTCTCGGTTAA

Protein sequence : 
MQKVFFTMLNSIKVGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENNAGQKEKTF
IVTPPLFVSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAP
TLLKFSRVGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGNVTFQSVNDYGALTSATTASLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 9e-52 50
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 5e-48 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeHA_C0655 YP_002044580.1 chaperone protein FimC VFG0445 Protein 4e-104 100
SeHA_C0655 YP_002044580.1 chaperone protein FimC VFG0911 Protein 2e-48 50
SeHA_C0655 YP_002044580.1 chaperone protein FimC VFG1644 Protein 3e-48 50
SeHA_C0655 YP_002044580.1 chaperone protein FimC VFG0875 Protein 4e-53 47
SeHA_C0655 YP_002044580.1 chaperone protein FimC VFG0455 Protein 2e-40 42