Gene Information

Name : SeHA_C4724 (SeHA_C4724)
Accession : YP_002048356.1
Strain : Salmonella enterica SL476
Genome accession: NC_011083
Putative virulence/resistance : Resistance
Product : tetracycline resistance protein, class B
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 4606940 - 4608145 bp
Length : 1206 bp
Strand : +
Note : identified by match to protein family HMM PF07690

DNA sequence : 
ATGAATAGTTCGACAAAGATCGCATTGGTAATTACGTTACTCGATGCCATGGGGATTGGCCTTATCATGCCAGTCTTGCC
AACGTTATTACGTGAATTTATTGCTTCGGAAGATATCGCTAACCACTTTGGCGTATTGCTTGCACTTTATGCGTTAATGC
AGGTTATCTTTGCTCCTTGGCTTGGAAAAATGTCTGACCGATTTGGTCGGCGCCCAGTGCTGTTGTTGTCATTAATAGGC
GCATCGCTGGATTACTTATTGCTGGCTTTTTCAAGTGCGCTTTGGATGCTGTATTTAGGCCGTTTGCTTTCAGGGATCAC
AGGAGCTACTGGGGCTGTCGCGGCATCGGTCATTGCCGATACCACCTCAGCTTCTCAACGCGTGAAGTGGTTCGGTTGGT
TAGGGGCAAGTTTTGGGCTTGGTTTAATAGCGGGGCCTATTATTGGTGGTTTTGCAGGAGAGATTTCACCGCATAGTCCC
TTTTTTATCGCTGCGTTGCTAAATATTGTCGCTTTCCTTGTGGTTATGTTTTGGTTCCGTGAAACCAAAAATACACGTGA
TAATACAGATACCGAAGTAGGGGTTGAGACGCAATCGAATTCGGTATACATCACTTTATTTAAAACGATGCCCATTTTGT
TGATTATTTATTTTTCAGCGCAATTGATAGGCCAAATTCCCGCAACGGTGTGGGTGCTATTTACCGAAAATCGTTTTGGA
TGGAATAGCATGATGGTTGGCTTTTCATTAGCGGGTCTTGGTCTTTTACACTCAGTATTCCAAGCCTTTGTGGCAGGAAG
AATAGCCACTAAATGGGGCGAAAAAACGGCAGTACTGCTCGGATTTATTGCAGATAGTAGTGCATTTGCCTTTTTAGCGT
TTATATCTGAAGGTTGGTTAGTTTTCCCTGTTTTAATTTTATTGGCTGGTGGTGGGATCGCTTTACCTGCATTACAGGGA
GTGATGTCTATCCAAACAAAGAGTCATCAGCAAGGTGCTTTACAGGGATTATTGGTGAGCCTTACCAATGCAACCGGTGT
TATTGGCCCATTACTGTTTGCTGTTATTTATAATCATTCACTACCAATTTGGGATGGCTGGATTTGGATTATTGGTTTAG
CGTTTTACTGTATTATTATCCTGCTATCGATGACCTTCATGTTAACCCCTCAAGCTCAGGGGAGTAAACAGGAGACAAGT
GCTTAG

Protein sequence : 
MNSSTKIALVITLLDAMGIGLIMPVLPTLLREFIASEDIANHFGVLLALYALMQVIFAPWLGKMSDRFGRRPVLLLSLIG
ASLDYLLLAFSSALWMLYLGRLLSGITGATGAVAASVIADTTSASQRVKWFGWLGASFGLGLIAGPIIGGFAGEISPHSP
FFIAALLNIVAFLVVMFWFRETKNTRDNTDTEVGVETQSNSVYITLFKTMPILLIIYFSAQLIGQIPATVWVLFTENRFG
WNSMMVGFSLAGLGLLHSVFQAFVAGRIATKWGEKTAVLLGFIADSSAFAFLAFISEGWLVFPVLILLAGGGIALPALQG
VMSIQTKSHQQGALQGLLVSLTNATGVIGPLLFAVIYNHSLPIWDGWIWIIGLAFYCIIILLSMTFMLTPQAQGSKQETS
A

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(B) AAL08445.1 tetracycline resistance protein TetA(B) Not tested SRL Protein 3e-163 100
tetB AEA34667.1 tetracycline resistance determinant Not tested Not named Protein 3e-163 99
tetA(B) AEZ06045.1 tetracycline efflux protein Not tested Tn6167 Protein 4e-163 99
BJAB07104_00277 YP_008207742.1 Permeases of the major facilitator superfamily Not tested AbaR25 Protein 2e-162 99
BJAB0868_00281 YP_008211607.1 Permeases of the major facilitator superfamily Not tested AbaR26 Protein 2e-162 99
tetA(B) AEQ20905.1 tetracycline resistance protein Not tested Tn6166 Protein 2e-162 99
tetA YP_005797160.1 tetracycline resistance protein, class G (TETA(G)) Not tested AbaR4e Protein 3e-159 99
ABZJ_00260 YP_005524216.1 Tetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter) Not tested AbaR22 Protein 6e-163 99
tetA(B) AFH57202.1 tetracycline resistance protein Not tested AbaR4a Protein 4e-163 99
tet(H) YP_005176248.1 tetracycline efflux protein, class H Not tested ICEPmu1 Protein 3e-77 54
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 7e-85 52
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 1e-81 51
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 1e-81 51
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 1e-81 51
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 1e-81 51
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 7e-70 48
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 7e-70 48
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 9e-70 48
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 7e-70 48
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 3e-70 48
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 4e-70 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B NC_010558.1.6275971. Protein 2e-163 100
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B V00611.gene.p01 Protein 4e-162 99
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AB084246.gene.p01 Protein 1e-163 99
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B L06798.gene.p01 Protein 2e-91 63
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AJ250203.gene.p01 Protein 3e-82 59
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B Y19116.gene.p01 Protein 1e-78 55
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B L06940.gene.p01 Protein 1e-79 55
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B Y15510.gene.p01 Protein 4e-78 54
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B CP004022.1.gene2534. Protein 1e-78 54
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AF038993.gene.p01 Protein 9e-79 54
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B NC_010410.6002612.p0 Protein 4e-85 52
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AF133140.gene.p01 Protein 4e-85 52
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AF133139.gene.p01 Protein 2e-83 51
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B NC_011586.7045189.p0 Protein 3e-66 48
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AF534183.gene.p01 Protein 2e-70 48
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B NC_010410.6002597.p0 Protein 2e-70 48
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B CP001485.1.gene2821. Protein 2e-70 48
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B Y19114.gene.p01 Protein 7e-69 47
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B X75761.gene.p01 Protein 6e-70 47
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AF070999.gene.p01 Protein 1e-67 46
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AF121000.gene.p01 Protein 2e-62 45
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AY264780.2.gene3.p01 Protein 2e-62 44
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AJ420072.gene.p01 Protein 5e-59 44
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B AY743590.gene.p01 Protein 1e-59 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeHA_C4724 YP_002048356.1 tetracycline resistance protein, class B VFG1036 Protein 1e-163 100