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Name : SeHA_C3247 (SeHA_C3247) Accession : YP_002047002.1 Strain : Salmonella enterica SL476 Genome accession: NC_011083 Putative virulence/resistance : Virulence Product : fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3171171 - 3173660 bp Length : 2490 bp Strand : - Note : identified by match to protein family HMM PF00577 DNA sequence : ATGAAAATTACCCGGCTTGCCATTCTGATTACCCTGACATTTTCCGTCCTGAAGTCGCAGGCCACGGAGTTCAATGCCAG CCTGCTGGACAGCGGGAACCTGTCCAACGTGGACCTCACGGCCTTCAGCCGCGAGGGGTATGTGGCGCCCGGTAACTATA TTCTCGATATCTGGCTCAATGACCAGCCGGTACGGGAACAGTATCCGGTCAGAGTTGTACCGGTTGCCGGACGCGACGCG GCCGTCATCTGTGTGACAACAGACATGGTGGCCATGCTGGGTCTTAAGGATAAGATTATTCATGGCCTGAAACCCGTTAC CGGTATCCCGGACGGGCAATGCCTTGAGCTGCGCTCCGCTGACAGTCAGGTACGGTACAGCGCTGAAAATCAGCGTCTGA CCTTCATTATCCCCCAAGCCTGGATGCGTTATCAGGACCCGGACTGGGTGCCTCCTTCACGCTGGAGCGACGGCGTCACC GCCGGCCTGCTCGATTACAGCCTGATGGCCAACCGCTATATGCCGCAGCAGGGGGAGACCTCTACCAGCTACAGCCTCTA CGGCACCGCCGGGTTTAATCTCGGCGCCTGGCGGTTGCGGAGCGATTACCAGTACAGCCGTTTTGACAGTGGGCGGGGCG CATCACAGTCCGATTTTTATCTGCCGCAGACGTATCTGTTCCGTGCCCTGCCAGCACTGCGCTCAAAACTGACGCTCGGA CAGACGTACCTCAGCTCCGCTATTTTTGACTCCTTCCGCTTTGCCGGGCTCACTTTGGCCAGCGATGAGCGCATGCTGCC GCCCTCTCTTCAGGGGTATGCCCCGAAAATCAGCGGCATTGCGAACAGTAATGCACAGGTTACCGTCAGCCAGAATGGAC GCATTCTGTACCAGACCCGGGTGTCGCCGGGGCCTTTTGAGCTTCCCGACCTGAGCCAGAATATCAGCGGCAACCTGGAT GTCAGCGTCCGGGAAAGCGACGGTAGCGTCCGGACCTGGCAGGTCAACACGGCCAGCGTCCCCTTTATGGCACGCCAGGG ACAGGTTCGCTATAAGGTGGCCGCCGGACGTCCGCTGTACGGCGGGACGCATAACAACAGCACGGTCAGCCCTGACTTTC TGCTCGGGGAGGCCACCTGGGGAGCATTTAACAACACGTCGCTGTATGGCGGCCTCATTGCCTCCACCGGCGACTACCAG TCCGCGGCGCTCGGGATCGGCCAGAATATGGGGCTGCTGGGCGCTCTGTCTGCGGACGTCACCCGCTCAGATGCGCGGTT GCCGCATGGGAAGAAGCAGTCCGGTTACAGCTACCGTATCAACTATGCCAAAACGTTTGATAAAACCGGCAGTACCCTGG CGTTCGTCGGATACCGCTTCTCGGACCGCCATTTTCTGTCCATGCCGGAGTACCTGCAGCGTCGGGCCACCGACGGCGGC GATGCATGGCATGAAAAACAAAGCTACACCGTGACTTACAGCCAGTCCGTTCCGGTACTCAATATGAGCGCGGCCCTCTC GGTAAGCCGGCTCAATTACTGGAATGCGCAGTCCAACAATAACTACATGCTCAGCTTCAACAAAGTGTTCAGTCTCGGCG ACCTTCAGGGGCTCTCGGCCTCGGTGTCGTTTGCCCGTAACCAGTACACCGGCGGGGGGAGCCAGAACCAGGTCTACGCC ACCATCAGTATCCCGTGGGGCGACAGCCGCCAGGTGAGCTACAGCGTGCAGAAGGATAACCGGGGCGGCCTGCAGCAGAC CGTGAATTACAGCGATTTCCATAACCCGGATACCACATGGAACATCAGCGCCGGTCATAACCGCTATGACACCGGCAGTA ACAGCAGCTTTAGCGGCAGCGTGCAGAGCCGTCTGCCGTGGGGTCAGGCGGCAGCGGACGCCACCCTGCAGCCCGGACAG TACCGCAGCCTGGGCCTGAGCTGGTACGGCTCGGTGACCGCCACCGCCCACGGCGCCGCCTTCAGCCAGTCGATGGCCGG GAATGAGCCTCGCATGATGATAGATACCGGAGACGTGGCCGGTGTGCCGGTGAACGGCAACAGCGGGGTGACCAACCGCT TCGGGGTGGGCGTGGTAAGCGCCGGCAGCAGCTATCGGCGCAGCGATATTTCGGTTGATGTGGCCGCCCTGCCGGAGGAC GTGGACGTCAACAGCTCCGTCATTAGCCAGGTGCTGACGGAGGGCGCGGTGGGCTACCGGAAAATTGACGCCAGCCAGGG GGAGCAGGTGCTCGGTCATATCCGACTGGCTGATGGCGCCAGTCCACCGTTTGGCGCTCTGGTAGTGTCCGGGAAAAGCG GCAGAACCGCGGGGATGGTCGGAGATGACGGTTTGGTCTACCTGACAGGCCTCAGCGGGGAAGACCGCCGGACCCTGAAT GTGTCCTGGGATGGCCGGGTGCAGTGCAAACTCACCCTGCCGGAAACGGTGACACTCAGTCGGGGGCCGCTGTTACTGCC CTGCAGATAA Protein sequence : MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSREGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGRDA AVICVTTDMVAMLGLKDKIIHGLKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMANRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGRGASQSDFYLPQTYLFRALPALRSKLTLG QTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLD VSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQ SAALGIGQNMGLLGALSADVTRSDARLPHGKKQSGYSYRINYAKTFDKTGSTLAFVGYRFSDRHFLSMPEYLQRRATDGG DAWHEKQSYTVTYSQSVPVLNMSAALSVSRLNYWNAQSNNNYMLSFNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYA TISIPWGDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSRLPWGQAAADATLQPGQ YRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGVPVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPED VDVNSSVISQVLTEGAVGYRKIDASQGEQVLGHIRLADGASPPFGALVVSGKSGRTAGMVGDDGLVYLTGLSGEDRRTLN VSWDGRVQCKLTLPETVTLSRGPLLLPCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 6e-129 | 41 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 1e-128 | 41 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 2e-128 | 41 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 1e-128 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeHA_C3247 | YP_002047002.1 | fimbrial usher protein | VFG1548 | Protein | 4e-129 | 41 |
| SeHA_C3247 | YP_002047002.1 | fimbrial usher protein | VFG0884 | Protein | 5e-129 | 41 |
| SeHA_C3247 | YP_002047002.1 | fimbrial usher protein | VFG0895 | Protein | 7e-129 | 41 |
