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Name : SeHA_C3088 (SeHA_C3088) Accession : YP_002046858.1 Strain : Salmonella enterica SL476 Genome accession: NC_011083 Putative virulence/resistance : Virulence Product : type III secretion outer membrane pore, YscC/HrcC family Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 3016111 - 3017781 bp Length : 1671 bp Strand : - Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 DNA sequence : TTGGCCAGAGTGCTGGCATGTGCCGCGCTTGTTCTGGTTGCACCTGGTTATTCTAGTGAAAAAATACCTGTAACGGGAAG TGGGTTTGTTGCGAAAGACGATAGCCTGCGGACATTTTTCGATGCCATGGCGCTACAGCTAAAGGAGCCTGTCATTGTTA GCAAAATGGCGGCACGAAAAAAAATTACGGGCAACTTTGAGTTTCACGATCCTAACGCATTACTGGAGAAGCTTTCCCTA CAACTGGGGCTGATTTGGTATTTCGATGGGCAGGCTATCTATATTTATGACGCCAGTGAAATGCGCAATGCCGTGGTTTC TTTACGCAACGTCTCACTCAATGAGTTCAACAATTTTCTAAAACGCTCAGGTTTATATAACAAAAATTACCCGCTACGTG GCGATAACCGTAAAGGAACATTCTATGTTTCAGGGCCACCCGTCTATGTTGATATGGTGGTCAACGCCGCCACCATGATG GACAAGCAAAACGATGGTATTGAGCTGGGACGCCAGAAAATAGGGGTGATGCGTCTGAACAATACCTTCGTGGGCGATCG TACCTACAATCTGCGCGATCAGAAAATGGTTATCCCCGGTATTGCTACGGCGATTGAAAGGTTATTGCAGGGAGAAGAGC AACCCTTAGGTAATATTGTCAGTAGCGAACCTCCGGCGATGCCAGCGTTTTCAGCGAATGGAGAAAAAGGTAAAGCAGCA AATTATGCCGGTGGCATGAGTCTGCAGGAAGCTTTAAAGCAAAACGCCGCGGCGGGCAATATTAAAATCGTGGCCTATCC GGATACCAACAGTTTGTTAGTAAAAGGAACGGCTGAGCAGGTGCATTTTATCGAAATGCTGGTTAAAGCGCTGGATGTCG CCAAACGTCACGTAGAATTATCCCTGTGGATTGTCGATCTTAATAAAAGCGATCTGGAGCGTTTGGGCACTTCATGGAGC GGCAGCATTACTATTGGGGACAAACTTGGCGTGTCATTAAACCAGGCTTCAATAAGTACCCTCGATGGCAGTCGATTCAT CGCCGCGGTAAATGCGTTAGAAGAGAAGAAACAGGCGACGGTGGTTTCGCGCCCGGTATTACTGACTCAGGAAAATGTTC CCGCTATTTTTGATAACAACAGAACGTTTTACACCAAGCTGATTGGGGAACGTAATGTGGCGCTTGAGCATGTAACATAC GGAACAATGATCCGAGTGCTGCCCCGTTTTTCCGCAGATGGTCAGATAGAAATGTCGCTGGACATTGAAGATGGTAACGA TAAGACGCCGCAATCCGATACTACCACCTCCGTAGATGCGTTACCCGAAGTCGGACGAACGTTAATTAGCACTATTGCGA GAGTTCCGCACGGAAAAAGTTTGCTGGTCGGTGGTTATACACGGGATGCAAATACCGATACTGTCCAAAGTATTCCGTTT TTAGGCAAATTACCGCTTATTGGTAGCCTGTTCCGTTATTCCAGTAAGAATAAAAGTAATGTTGTTCGTGTATTCATGAT TGAACCAAAAGAAATTGTCGACCCGTTAACGCCGGATGCCAGCGAATCGGTAAACAATATTCTGAAACAAAGCGGTGCCT GGAGTGGGGACGATAAGTTACAGAAATGGGTTCGTGTTTATCTGGATAGAGGTCAGGAGGCAATTAAATGA Protein sequence : MARVLACAALVLVAPGYSSEKIPVTGSGFVAKDDSLRTFFDAMALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSL QLGLIWYFDGQAIYIYDASEMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAATMM DKQNDGIELGRQKIGVMRLNNTFVGDRTYNLRDQKMVIPGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSANGEKGKAA NYAGGMSLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIVDLNKSDLERLGTSWS GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVALEHVTY GTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPF LGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDASESVNNILKQSGAWSGDDKLQKWVRVYLDRGQEAIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| invG | NP_457292.1 | secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 0.0 | 99 |
| invG | NP_806501.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 0.0 | 99 |
| invG | YP_217817.1 | invasion protein; outer membrane | Virulence | SPI-1 | Protein | 0.0 | 99 |
| invG | NP_461819.1 | outer membrane secretin precursor | Virulence | SPI-1 | Protein | 0.0 | 99 |
| ECs3733 | NP_311760.1 | EivG | Not tested | LIM | Protein | 2e-145 | 55 |
| invG | AAS66859.1 | InvG | Not tested | SSR-2 | Protein | 5e-132 | 50 |
| ysaC | AAS66838.1 | YsaC | Not tested | SSR-1 | Protein | 1e-92 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeHA_C3088 | YP_002046858.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG0559 | Protein | 0.0 | 99 |
| SeHA_C3088 | YP_002046858.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG1004 | Protein | 1e-125 | 51 |
| SeHA_C3088 | YP_002046858.1 | type III secretion outer membrane pore, YscC/HrcC family | VFG2463 | Protein | 3e-103 | 43 |
