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Name : SeHA_C3060 (SeHA_C3060) Accession : YP_002046834.1 Strain : Salmonella enterica SL476 Genome accession: NC_011083 Putative virulence/resistance : Virulence Product : type III secretion apparatus lipoprotein, YscJ/HrcJ family Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4669 EC number : - Position : 2989510 - 2990268 bp Length : 759 bp Strand : - Note : identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 DNA sequence : ATGATTCGTCGATATCTATATACTTTTCTGCTGGTAATGACCCTTGCCGGCTGTAAAGATAAGGATCTTTTAAAAGGACT GGACCAGGAACAGGCTAATGAGGTCATTGCCGTTCTGCAAATGCACAATATAGAGGCGAATAAAATTGATAGCGGAAAAT TGGGCTATAGCATTACCGTTGCTGAGCCTGATTTTACCGCTGCGGTGTACTGGATTAAAACTTATCAGCTTCCTCCCCGG CCACGGGTGGAAATAGCGCAGATGTTCCCGGCGGATTCGCTGGTATCGTCTCCGCGAGCTGAAAAGGCCAGGTTATATTC GGCTATTGAACAGCGACTGGAACAGTCATTACAGACGATGGAGGGCGTGCTCTCCGCCAGGGTCCATATTAGTTATGATA TTGATGCTGGTGAAAATGGCCGCCCGCCAAAACCTGTTCATCTGTCGGCATTAGCCGTATATGAACGAGGTTCGCCGCTT GCGCATCAGATCAGCGATATCAAGCGTTTCTTAAAGAATAGTTTTGCCGATGTGGATTATGACAACATTTCTGTTGTGTT GTCAGAACGTTCTGATGCCCAATTACAGGCTCCCGGCACACCAGTAAAACGTAATTCTTTTGCAACCAGTTGGATTGTGT TGATTATTTTGTTATCCGTGATGTCAGCAGGCTTTGGCGTCTGGTATTACAAAAACCATTATGCCCGCAATAAGAAAGGC ATAACGGCTGATGATAAGGCGAAATCGTCAAATGAATAG Protein sequence : MIRRYLYTFLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPR PRVEIAQMFPADSLVSSPRAEKARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGSPL AHQISDIKRFLKNSFADVDYDNISVVLSERSDAQLQAPGTPVKRNSFATSWIVLIILLSVMSAGFGVWYYKNHYARNKKG ITADDKAKSSNE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prgK | YP_217790.1 | cell invasion protein | Virulence | SPI-1 | Protein | 3e-116 | 100 |
| prgK | NP_461792.1 | needle complex inner membrane lipoprotein | Virulence | SPI-1 | Protein | 3e-116 | 100 |
| prgK | NP_806474.1 | pathogenicity island 1 effector protein | Virulence | SPI-1 | Protein | 3e-115 | 99 |
| prgK | NP_457265.1 | pathogenicity 1 island effector protein | Virulence | SPI-1 | Protein | 3e-115 | 99 |
| prgK | AAS66872.1 | PrgK | Virulence | SSR-2 | Protein | 5e-57 | 58 |
| ECs3716 | NP_311743.1 | EprK | Not tested | LIM | Protein | 3e-54 | 56 |
| eprK | AAZ31284.1 | EprK | Virulence | ETT2 | Protein | 3e-53 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeHA_C3060 | YP_002046834.1 | type III secretion apparatus lipoprotein, YscJ/HrcJ family | VFG0533 | Protein | 1e-116 | 100 |
| SeHA_C3060 | YP_002046834.1 | type III secretion apparatus lipoprotein, YscJ/HrcJ family | VFG0998 | Protein | 3e-45 | 47 |
| SeHA_C3060 | YP_002046834.1 | type III secretion apparatus lipoprotein, YscJ/HrcJ family | VFG1787 | Protein | 2e-37 | 46 |
