|
Name : SeHA_C0026 (SeHA_C0026) Accession : YP_002043994.1 Strain : Salmonella enterica SL476 Genome accession: NC_011083 Putative virulence/resistance : Virulence Product : outer membrane usher protein FimD Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 26958 - 29624 bp Length : 2667 bp Strand : + Note : identified by match to protein family HMM PF00577 DNA sequence : TTGGCGCAACGACGCCAGCACGCGTTTGTCCAGCTTCATGATGTTATGCGTAATCAGCTTTTCATGACGCGATATTACTC CAGCGTAACTAAACCCGTATTAACCCCGCTGGCGTTGGCTATCGCACTGGCGCCTGCGCCGGGGTGGGCGGAAAACTATT TCAACCCGGCGTTTCTGTCTGACGACCCGTCTGCGGTGGCCGACCTATCGACCTTTTCCCGTAATGCCCAGGCGGCGGGG ATGTATCGCGTTGACGTTTACCTGAACAATACGTTTCTCGCGACCAGAGACATTGCCTTCCAGGCGGTGAAGACGACGGG AAAAAGCGCGCCCACCGATGACAGCGGATTACGCGCCTGCCTGACGCCTGAAATGCTTAAAAATATGGGGGTAAACACCG GGGCGTTTCCATTGTTGGCGAAGGCGGCGGCGGGAAGTTGCCCGGATCTCGCCAGTGCGATACCGGCCGCCCGGACCCGC TTTGATTTTGCGCAGCAACGTCTCGACATTAGCATCCCGCAGGCGGCGATGGTTGCCAGCGCCAGAGGCTATATCCCACC GCAATACTGGGATGAAGGTATTAACGCGTTGCTATTGAATTACACCTTTACCGGCGCGAATAGTCAGGATCGGAGCCCTG GCGGCAGTGCGGAGAACAGCTATTTTCTTGGATTGAATAGCGGCCTTAATCTGGGGGCCTGGCGGTTACGCGACTACTCC ACATGGAACGCGAATAGCGGCGATCAGAATAGCGACAGCGACTGGCAGCACATCAGTACTTATCTGGAACGTGATGTGGT CTTTTTGCAGGGAGAACTGACGGCAGGCGATAGTTATACCCCCTCCGCATTATTCGACAGCCTTCCTTTTCGCGGGCTAC AACTGGCGTCTGACGACAATATGTTGCCAGACAGCATGAAGGGCTTCGCGCCGACCATTCACGGCATTGCCAGAAGCAAC GCGCAAGTGACCATTCGGCAAAACGGCTACATCATCAATCAGCGCTATGTGCCGCCCGGGGCATTTACTATTAATGATCT CTATCCTACCGCCGCCAGCGGCGATTTGACTGTGGAAGTCAAAGAATCCGACGGTTCTATTAATCGCTATAACGTGCCCT ATTCCGCCGTGCCGATTCTACAACGAGAAGGGCGGCTGAAGTATGCGGCGACGGTGGCGGAGTATCGCAGCGATAGTAGT CAAAAAGAGAAGGTGAAATTCAGTCAGGCGACCTTGATATGGGGGTTACCGCATGGTTTTACGCTGTATGGCGGAACACA ACTTTCCAGTCATTATCACGCGCTGGCGATCGGCAGCGGCGCAAATCTGGGCGACTGGGGCGCGGTGTCGCTGGATGTCA CCCAGGCTACCAGTACGCTGGCGGATAATAACACCTACCAGGGGCAATCGCTGCGTTTCCTGTATGCCAAATCGCTTGCA CAGTCAGGAACCAATTTACAGCTTATGGGCTATCGCTATTCAACCTCGGGCTTTTATACGCTGGATGATACCACGTGGAA ACGGATGAGCGGCTATGACGATGACAGTCGGACTGACAGCGATAAAAGCAGGCCGGAATGGGCGGATTATTACAATCTTT ATTATACCAGGAGGGGGAAAGTACAACTCGATATCAATCAACAGCTAGGCGGGTTGGGATCGCTTTTTATTACCGGCAGT CAGCAAAGTTACTGGCACACTGATGAAAAGGATTCTTTGTTGCAGGTGGGATACAGCGATACGCTGGCGGGTATTGCATG GAGCGTTTCTTACAACAATAACAAATCCGCAGGCGATGCGGAGCGCGATCAAATTTTCGCGCTGAATATCTCGGTGCCGC TAAGTCAATGGCTGCAACACGATGATGAAGTCACGCGCCATCACAATGTTTACGCTACCTTTAGCACCAGTACGGACAAA CAGCATAACGTTATGCAGAATGCGGGCCTTAGCGGCACACTGCTGGACGAAAACAATCTTAGTTACAACATACAGCAAGG CTATCAGAATCACGGTATTGGCGAAAGCGGCGCCGCTAGCCTGGAATACGATGGCACGAAAGGTAACGCCAATATTGGCT ATAACGTTAGCGATAACGGCGATTACCAGCAGGTGAACTATGGCCTGAGCGGCGGCCTGGTGGCGCACGCGCATGGAGTG ACGCTAAGCCAGCCGTTAGGCAATACCAATATTTTGATTGCCGCGCCGGGCGCAGCCAATGTCGGCGTTGTCGACCAGCC GGGTATTCATACGGACGCGCGTGGCTATGCGGTGGTGCCGTATGCGACGACATATCGCCAAAACCGTATGGCGCTGGACG TTAACGCCATGGCTGATGATGTCGATATTGATGACGCGGTGACTCGCGTTGTGCCGACCGAAGGCGCGCTGGTTCTGGCC AGCTTTAAAGCGCGGGTTGGCGCGCGTGCCCTGGTAACGCTGAATCATAACGGTAAGCCTGTACCCTTTGGCGCAACGGT GACGGTGAATGATCGCCATGCGGAGGCGATTGTTGACGAGGCCGGGGAGGTCTATCTTTCCGGGTTGTCAGCGCAAGGCG TTCTGCACGTTCGCTGGGGGAACCTGCCGGATCAACAGTGCGTCGCGTCCTATCATCTCTCTTCCTCCCGTCAGATTCTG AGTCGACAACATGCGGAGTGTCATTAA Protein sequence : MAQRRQHAFVQLHDVMRNQLFMTRYYSSVTKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAG MYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTR FDFAQQRLDISIPQAAMVASARGYIPPQYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGAWRLRDYS TWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSN AQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSS QKEKVKFSQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLA QSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGS QQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDK QHNVMQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGTKGNANIGYNVSDNGDYQQVNYGLSGGLVAHAHGV TLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLA SFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHLSSSRQIL SRQHAECH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 51 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeHA_C0026 | YP_002043994.1 | outer membrane usher protein FimD | VFG0876 | Protein | 0.0 | 52 |
| SeHA_C0026 | YP_002043994.1 | outer membrane usher protein FimD | VFG1645 | Protein | 0.0 | 50 |
| SeHA_C0026 | YP_002043994.1 | outer membrane usher protein FimD | VFG0912 | Protein | 0.0 | 50 |
| SeHA_C0026 | YP_002043994.1 | outer membrane usher protein FimD | VFG0446 | Protein | 6e-179 | 49 |
| SeHA_C0026 | YP_002043994.1 | outer membrane usher protein FimD | VFG0454 | Protein | 4e-162 | 43 |
