Gene Information

Name : SeHA_C1544 (SeHA_C1544)
Accession : YP_002045414.1
Strain : Salmonella enterica SL476
Genome accession: NC_011083
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein, HrpE/YscL family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1497104 - 1497778 bp
Length : 675 bp
Strand : +
Note : identified by match to protein family HMM TIGR02499

DNA sequence : 
ATGAGTTTTACTTCACTTCCTCTGACGGAAATTAACCATAAGCTACCCGCTCGAAATATTATTGAGTCACAGTGGATAAC
ATTACAATTAACTTTATTTGCGCAAGAGCAACAAGCTAAGAGCGTTTCACATGCTATTGTGAGCTCCGCTTACCGTAAGG
CTGAAAAAATCATCCGAGACGCCTATCGTTATCAGCGTGAACAGAAAGTTGAGCAGCAACAAGAACTAGCGTGCTTGCGT
AAAAATACGCTGGAAAAAATGGAAGTGGAATGGCTGGAACAGCATGTAAAACATTTACAAGACGATGAAAATCAATTTCG
TTCATTGGTCGATCACGCAGCGCATCATATTAAAAATAGTATAGAACAGGTTCTGTTGGCCTGGTTCGACCAACAGTCGG
TAGACAGTGTTATGTGCCATCGTCTGGCACGCCAGGCCACGGCTATGGCGGAAGAGGGAGCGCTTTATTTGCGTATTCAT
CCTGAAAAAGAGGCATTGATGCGTGAAACTTTTGGCAAGCGGTTTACGTTGATTATCGAGCCTGGTTTCTCTCCCGATCA
GGCTGAACTTTCCTCAACACGATATGCCGTTGAGTTTTCACTTTCTCGTCATTTCAACGCGTTACTGAAATGGTTACGTA
ATGGTGAAGATAAAAGAGGTCGCGATGAATATTAA

Protein sequence : 
MSFTSLPLTEINHKLPARNIIESQWITLQLTLFAQEQQAKSVSHAIVSSAYRKAEKIIRDAYRYQREQKVEQQQELACLR
KNTLEKMEVEWLEQHVKHLQDDENQFRSLVDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIH
PEKEALMRETFGKRFTLIIEPGFSPDQAELSSTRYAVEFSLSRHFNALLKWLRNGEDKRGRDEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaK NP_460376.1 type III secretion system apparatus protein Virulence SPI-2 Protein 2e-101 99
ssaK YP_216419.1 secretion system apparatus protein SsaK Virulence SPI-2 Protein 6e-99 99
ssaK CAA70533.1 secretion system apparatus Virulence SPI-2 Protein 1e-100 99
STY1709 NP_456117.1 putative pathogenicity island protein Virulence SPI-2 Protein 8e-99 98
t1279 NP_805082.1 pathogenicity island protein Not tested SPI-2 Protein 8e-99 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeHA_C1544 YP_002045414.1 type III secretion apparatus protein, HrpE/YscL family VFG0511 Protein 9e-102 99