Gene Information

Name : SeHA_C1536 (SeHA_C1536)
Accession : YP_002045406.1
Strain : Salmonella enterica SL476
Genome accession: NC_011083
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 1493046 - 1493474 bp
Length : 429 bp
Strand : +
Note : identified by match to protein family HMM TIGR02552

DNA sequence : 
ATGAAAGAAGATCAGAAAAATAAAATACCCGAAGACATTCTGAAACAGCTATTATCCGTTGATCCGGAAACCGTTTATGC
CAGTGGTTACGCCTCATGGCAGGAGGGGGATTATTCGCGCGCCGTAATCGATTTTAGTTGGCTGGTGATGGCCCAGCCAT
GGAGTTGGCGTGCCCATATTGCATTGGCTGGCACCTGGATGATGCTTAAAGAATACACGACGGCCATTAATTTCTATGGA
CATGCCTTGATGCTGGATGCCAGCCATCCAGAACCGGTTTACCAAACGGGCGTCTGTCTCAAAATGATGGGGGAACCCGG
GTTGGCGAGAGAGGCTTTTCAAACCGCAATCAAGATGAGTTATGCGGATGCCTCATGGAGTGAGATTCGCCAGAATGCGC
AAATAATGGTTGATACTCTTATTGCTTAA

Protein sequence : 
MKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYG
HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTLIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1424 YP_216411.1 secretion system chaperone protein SscB Virulence SPI-2 Protein 5e-62 100
sscB NP_460368.1 secretion system chaperone Virulence SPI-2 Protein 5e-62 100
sscB AAC28884.1 SscB Virulence SPI-2 Protein 4e-62 100
sscB CAA12190.1 SscB Virulence SPI-2 Protein 4e-62 100
sscB NP_456125.1 putative pathogenicity island protein Virulence SPI-2 Protein 2e-61 99
sscB NP_805074.1 pathogenicity island protein Virulence SPI-2 Protein 2e-61 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SeHA_C1536 YP_002045406.1 type III secretion low calcium response chaperone LcrH/SycD VFG0504 Protein 2e-62 100