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Name : SeHA_C1533 (SeHA_C1533) Accession : YP_002045403.1 Strain : Salmonella enterica SL476 Genome accession: NC_011083 Putative virulence/resistance : Virulence Product : translocation machinery component Function : - COG functional category : S : Function unknown COG ID : COG5613 EC number : - Position : 1490512 - 1491966 bp Length : 1455 bp Strand : + Note : identified by match to protein family HMM PF04888 DNA sequence : ATGAATCGAATTCACAGTAATAGCGATAGCGCCGCAGGAGTAACCGCCTTAACACATCATCACTTAAGCAATGTCAGTTG CGTTTCCTCGGGTTCGCTGGGAAAGCGCCAGCATCGTGTGAATTCTACTTTTGGCGATGGCAACGCCGCGTGTCTGCTAT CCGGGAAAATTAGTCTTCAGGAGGCAAGCAATGCGTTGAAGCAACTGCTTGATGCCGTACCCGGAAATCATAAGCGTCCA TCATTGCCTGACTTTTTGCAGACCAATCCCGCGGTTTTATCAATGTTGATGACGACATTAATACTCAGCGTTTTTGGTAA TAACGCTCAATCGTTATGCCAACAGCTTGAGCGGGCAACTGAGGTGCAAAATGCATTACGTGATAAGCAGGTAAAGGAGT ATCAGGAGCAGATCCAGAAAGCGATAGAGCAGGAGGATAAAGCGCGTAAAGCGGGCATTTTTGGCGCTATTTTTGACTGG ATTACCGGCATATTTGAAACCGTGATTGGCGCCTTAAAAGTTGTGGAAGGTTTTCTGTCCGGTAATCCCGCAGAAATGGC TAGCGGCGTAGCTTATATGGCCGCAGGTTGTGCAGGAATGGTTAAAGCCGGAGCCGAAACGGCAATGATGTGCGGTGCTG ACCACGATACCTGTCAGGCGATTATTGACGTGACAAGTAAGATTCAATTTGGTTGTGAAGCCGTCGCGCTGGCACTGGAT GTTTTCCAGATTGGCCGTGCTTTTATGGCGACGAGAGGTTTATCTGGCGCAGCTGCAAAAGTGCTTGACTCCGGTTTTGG CGAGGAAATGGTTGAGCGTATGGTAGGTGCAGGGGAAGCAGAAATAGAGGCGTTGGCTGAAAAGTTTGGCGAAGAAGTGA GCGAAAGTTTTTCCAAACAATTTGAGCCGCTTGAACGTGAAATGGCTATGGCGAATGAGATGGCAGAGGAGGCTGCCGAG TTTTCTCGTAACGTAGAAAATAATATGACGCGAAGCGCGGGAAAAAGCTTTACGAAAGAGGGGGTGAAAGCCATGGCAAA AGAAGCGGCAAAAGAAGCCCTGGAAAAATGTGTGCAAGAAGGGGAAAAGTTTCTGTTAAAAAATTTTCGTAATAAAGTTC TCTTCAATATGTTCAAAAAAATCCTGTATGCCTTACTGAGGGATTGTTCATTTAAAGGCTTACAGGCTATCAGATGTGCA ACCGAGGGTGCCAATCAGATGAATACTGGCATGGTTAACACAGAAAAAGCGAAGCTTGAAAAGAAAATAGAGCAATTAAT AACTCAGCAACGGTTTCTGGATTTCATAATGCAACAAACGGATGACCAAAAAAAGATAGAACAAAAACGCTTAGAGGAGC TTTATAAGGGTAGCGGTGCCGCGCTTAGAGATGTATTAGATACCATTGATCACTATAGTAGCGTTCAGGCGAGAATAGCT GGCTGGCGCGCTTAA Protein sequence : MNRIHSNSDSAAGVTALTHHHLSNVSCVSSGSLGKRQHRVNSTFGDGNAACLLSGKISLQEASNALKQLLDAVPGNHKRP SLPDFLQTNPAVLSMLMTTLILSVFGNNAQSLCQQLERATEVQNALRDKQVKEYQEQIQKAIEQEDKARKAGIFGAIFDW ITGIFETVIGALKVVEGFLSGNPAEMASGVAYMAAGCAGMVKAGAETAMMCGADHDTCQAIIDVTSKIQFGCEAVALALD VFQIGRAFMATRGLSGAAAKVLDSGFGEEMVERMVGAGEAEIEALAEKFGEEVSESFSKQFEPLEREMAMANEMAEEAAE FSRNVENNMTRSAGKSFTKEGVKAMAKEAAKEALEKCVQEGEKFLLKNFRNKVLFNMFKKILYALLRDCSFKGLQAIRCA TEGANQMNTGMVNTEKAKLEKKIEQLITQQRFLDFIMQQTDDQKKIEQKRLEELYKGSGAALRDVLDTIDHYSSVQARIA GWRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sseC | AAC28881.1 | SseC | Virulence | SPI-2 | Protein | 0.0 | 98 |
| sseC | NP_460365.1 | translocation machinery component | Virulence | SPI-2 | Protein | 0.0 | 98 |
| sseC | CAA12187.1 | SseC | Virulence | SPI-2 | Protein | 0.0 | 98 |
| sseC | NP_456128.1 | putative pathogenicity island effector protein | Virulence | SPI-2 | Protein | 0.0 | 97 |
| sseC | NP_805071.1 | pathogenicity island effector protein | Virulence | SPI-2 | Protein | 0.0 | 97 |
| sseC | YP_216408.1 | secretion system effector protein SseC | Virulence | SPI-2 | Protein | 0.0 | 97 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeHA_C1533 | YP_002045403.1 | translocation machinery component | VFG0501 | Protein | 0.0 | 98 |
