|
Name : SeHA_C1523 (SeHA_C1523) Accession : YP_002045394.1 Strain : Salmonella enterica SL476 Genome accession: NC_011083 Putative virulence/resistance : Virulence Product : pathogenicity island protein Function : - COG functional category : S : Function unknown COG ID : COG3272 EC number : - Position : 1479643 - 1480602 bp Length : 960 bp Strand : - Note : identified by match to protein family HMM PF04463; match to protein family HMM PF08349 DNA sequence : ATGAATAACAAACCCGTAGTCGGCATTAGCGGATGTCTGACTGGCGCCACGGTACGCTTTGATGGCGGACATAAGCGTAT GGATTTTGTCATGAACTCTCTGGCGCCGTGGGTGGCCTACAAACCGATCTGCCCAGAGGTGGCGATCGGCCTGCCCGTGC CCCGCCCTGCGCTGCGTCTTATCCAGACGACCTGTGGCGACATTCGGATGCGCTATAGCCATGCCCCGCACGATGACGTC ACCGAGCGAATGAATGCCTTTGCTGATCGGTTTCTGCCAACAATAGGCGAACTGGCGGGGTTTATTGTGTGTGCAAAATC GCCCAGTTGCGGAATGGAGCGCGTTCGCCTGTATGATGAAAAGGGTAACAGGGGCCGCAAAGCTGGCACGGGGCTGTTTA CCGCCGCGATGATGGACAAATATCCCTGGCTGCCGATAGAGGAAGATGGTCGCCTGCACGATCCGGTACTACGCGAGAAT TTCATCGCACGTATCTTCGCGCTACATGAATTAAATGCGCTACGCGCGCAGGGCTTGAGTCGTCACAGTTTGCTCGCGTT TCATAGCCGATACAAACTTCAGCTTCTCGCCCACCACCAGGCCGGCTACCGCGAAATTGGCCCTTTCGTCGCGCGTCTGC ATGAGTGGGACGATCTGGATGCCTTCTTTGTCCGATACAGAGAAAAACTGATGGCTATCCTGCGCCACCCCGCTTCACGT AAAAATCACACCAATGTGCTGATGCATATCCAGGGCTATTTTCACCGCGCGTTGAACAGCAGGCAACGCGCGGAATTACG CGAGGTGATTCTCGGCTACCGGGCGGGCCGACTACCTATCCTGGCACCGTTAACGCTGCTGAAGCACTATCTGGCGGAAC ATCCGGATGACTATCTACGCAGCCAGAATTATTTTGAGCCGTACCCTGATACATTAGGGCTGCGCTTAGCCATCACCTGA Protein sequence : MNNKPVVGISGCLTGATVRFDGGHKRMDFVMNSLAPWVAYKPICPEVAIGLPVPRPALRLIQTTCGDIRMRYSHAPHDDV TERMNAFADRFLPTIGELAGFIVCAKSPSCGMERVRLYDEKGNRGRKAGTGLFTAAMMDKYPWLPIEEDGRLHDPVLREN FIARIFALHELNALRAQGLSRHSLLAFHSRYKLQLLAHHQAGYREIGPFVARLHEWDDLDAFFVRYREKLMAILRHPASR KNHTNVLMHIQGYFHRALNSRQRAELREVILGYRAGRLPILAPLTLLKHYLAEHPDDYLRSQNYFEPYPDTLGLRLAIT |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf319 | NP_460354.1 | inner membrane protein | Not tested | SPI-2 | Protein | 7e-153 | 100 |
| ORF 319 | CAB37410.1 | - | Not tested | SPI-2 | Protein | 5e-153 | 100 |
| STY1731 | NP_456139.1 | putative pathogenicity island protein | Not tested | SPI-2 | Protein | 9e-153 | 99 |
| t1257 | NP_805060.1 | pathogenicity island protein | Not tested | SPI-2 | Protein | 9e-153 | 99 |
| SC1410 | YP_216397.1 | inner membrane protein | Not tested | SPI-2 | Protein | 2e-152 | 99 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeHA_C1523 | YP_002045394.1 | pathogenicity island protein | VFG0490 | Protein | 3e-153 | 100 |
