Gene Information

Name : SNSL254_A0598 (SNSL254_A0598)
Accession : YP_002039789.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 609705 - 610397 bp
Length : 693 bp
Strand : +
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGCTGAATAGTATAAAAGTAGGCTTTATTGTTCTTCTCACGTTATTTACTTCGCTGAACGTACAGGCGGCGGGGGGGAT
TGCATTAGGCGCCACGCGAGTTATTTATCCCTCGGCGGCGAAGCAGACTTCTCTGGCAATCAGTAATAGCGATACTCAAG
AACGTTACCTCGTCAATTCATGGATCGAAAATAACGCTGGGCAGAAAGAAAAAACGTTTATCGTTACGCCGCCTTTATTC
GTCAGCGAGCCCAAAAGTGAAAACACGCTGCGTATTATCTACGCCGGGCAACCGCTACCCGGGGATCGGGAGTCGTTATT
CTGGATGAACGTGAAAGCCATCCCGTCGGTCGATAAAAGTCATATTGAAGGAAAAAACGTTCTGCAACTGGCGATTCTGT
CGCGCATCAAACTGTTCGTGCGTCCGGCGAATTTGCCGCAGACGCCGGAAGACGCGCCGACCTTGCTGAAATTTTCCCGT
GTCGGCAACCATCTCAAGATAACCAACCCATCTGCTTATTACCTCACGCTGGTCAATATCAGCGTGGGCGCGAAAAAGAT
TGATAACGTGATGATCGCGCCAAAAAGCGACATGCAAATTCCCTTACCGACTGGCGCGCAGGGCAGCGTGACATTTCAGA
CAGTCAATGATTACGGCGCATTGACGTCGGCGACAACGGCCAGTCTCGGTTAA

Protein sequence : 
MLNSIKVGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENNAGQKEKTFIVTPPLF
VSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR
VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGSVTFQTVNDYGALTSATTASLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 4e-48 51
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 6e-52 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A0598 YP_002039789.1 chaperone protein FimC VFG0445 Protein 3e-104 99
SNSL254_A0598 YP_002039789.1 chaperone protein FimC VFG1644 Protein 2e-48 51
SNSL254_A0598 YP_002039789.1 chaperone protein FimC VFG0911 Protein 2e-48 50
SNSL254_A0598 YP_002039789.1 chaperone protein FimC VFG0875 Protein 3e-53 48
SNSL254_A0598 YP_002039789.1 chaperone protein FimC VFG0455 Protein 1e-40 42