Gene Information

Name : SNSL254_A0560 (SNSL254_A0560)
Accession : YP_002039752.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Resistance
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : 3.6.3.-
Position : 570836 - 571522 bp
Length : 687 bp
Strand : +
Note : identified by match to protein family HMM PF00005

DNA sequence :
ATGCCAGCGGAAAACAGTGTTGAAGTTCATCGTCTCAGGAAGTCCGTCGGTCAGGGTGAGCATGAGCTTTCCATCCTTAC
CGGAGTTGAACTGGTTGTCAAACGCGGCGAAACCATTGCGCTGATTGGCGAATCAGGATCGGGAAAATCTACGCTGCTGG
CGATTCTCGCTGGACTGGATGACGGCAGTAGCGGAGAGGTCAGTCTGGTCGGGAAACCGCTTCACCAGATGGACGAAGAG
GCGCGGGCGCAGCTTCGCGCTCAGCATGTCGGTTTTGTTTTTCAATCCTTCATGCTTATTCCTACGCTTAACGCGCTGGA
AAACGTTGAGCTACCGGCCCTGCTACGCGGTGAAAACAGCGGTCAGAGTAAGGCGGGGGCGAAAGCGCTGCTCGAACAAC
TGGGACTGGGAAAACGGCTTGACCACCTTCCGGCACAGCTTTCCGGCGGCGAACAGCAGCGCGTAGCGCTGGCGCGCGCG
TTTAACGGGCGTCCTGATGTGCTGTTTGCCGATGAGCCGACGGGCAACCTTGACCGTCAGACCGGAGATAAAATCGCCGA
CCTGCTATTTTCGCTTAACCGCGAGCACGGCACCACGCTGATTCTGGTGACGCACGACCCGGCGCTGGCGGCGCGCTGCG
ACCGGCGGCTGCGGTTGGTCAACGGTCAGTTACAGGAGGAGGTATGA

Protein sequence :
MPAENSVEVHRLRKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGKPLHQMDEE
ARAQLRAQHVGFVFQSFMLIPTLNALENVELPALLRGENSGQSKAGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDPALAARCDRRLRLVNGQLQEEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-31 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A0560 YP_002039752.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 5e-32 48
SNSL254_A0560 YP_002039752.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 7e-38 47
SNSL254_A0560 YP_002039752.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 3e-34 42