Gene Information

Name : SNSL254_A3917 (SNSL254_A3917)
Accession : YP_002042887.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : pili assembly chaperone, N- domain
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 3801373 - 3802071 bp
Length : 699 bp
Strand : -
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGAACCGCTCACGTTTGATATCTTGCACAGCACTGGTGCTGGCGTTGATTGCTCAAAACAGTTTTGCCGGAGGCGTGGC
ATTAAGCAGCACGCGTGTTATTTATGACGGTAGTAGAAAGGAAGCTTCTCTTACGGTAAATAATAAAAGCACCACGGATG
AATTTCTCATTCAGTCATGGATTGATGATGCTAACGGTAATAAAAAGACGCCCTTTATCATCACTCCACCGTTATTTAAA
TTAAGCCCGACTAAAAATAACGTTTTACGTATTGTTAATACGACGAACACGTTACCGCAGGATCGCGAGTCCGTTTATTG
GATTAACGTAAAAGCTATTCCTGCCAAAAGTGAAGACGCGGAAGCTAAAAACGTACTGCAGATCGCCGTACGTACCCGCT
TAAAACTGTTCTATCGCCCGGCGGGCCTGAAAGGCAATAGCATGGACGGCTGGAACAAACTGCAGTTCACCAGCGCAGGG
GCTAACCAGATCAAAGTGGAAAACCCATCTGCCTTTAACCTGACGTTTAATAAATTTTATGCCAACGGCCGTGATATTGA
AAAAACGGGAATGGTTCCGGCAAAAGGCTCATTGAATATTGAACTGCCAGCCGGCACCGGCAAGGTAAGCGAAGTTAAAT
ACAACATTATTAATGACTTTGGCACGGCTGGCGACATGTTGACACAGCGCGTTAACTAA

Protein sequence : 
MNRSRLISCTALVLALIAQNSFAGGVALSSTRVIYDGSRKEASLTVNNKSTTDEFLIQSWIDDANGNKKTPFIITPPLFK
LSPTKNNVLRIVNTTNTLPQDRESVYWINVKAIPAKSEDAEAKNVLQIAVRTRLKLFYRPAGLKGNSMDGWNKLQFTSAG
ANQIKVENPSAFNLTFNKFYANGRDIEKTGMVPAKGSLNIELPAGTGKVSEVKYNIINDFGTAGDMLTQRVN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 2e-40 42
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-38 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A3917 YP_002042887.1 pili assembly chaperone, N- domain VFG0455 Protein 4e-104 100
SNSL254_A3917 YP_002042887.1 pili assembly chaperone, N- domain VFG1644 Protein 2e-38 42
SNSL254_A3917 YP_002042887.1 pili assembly chaperone, N- domain VFG0911 Protein 2e-38 42
SNSL254_A3917 YP_002042887.1 pili assembly chaperone, N- domain VFG0445 Protein 1e-40 42