Gene Information

Name : SNSL254_A3103 (SNSL254_A3103)
Accession : YP_002042139.2
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : YscC/HrcC family type III secretion outer membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3018101 - 3019789 bp
Length : 1689 bp
Strand : -
Note : identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516

DNA sequence :
ATGAAGACACATATTCTTTTGGCCAGAGTGCTGGCATGTGCCGCGCTTGTTCTGGTTGCACCTGGTTATTCTAGTGAAAA
AATACCTGTAACGGGAAGTGGGTTTGTTGCGAAAGACGATAGCCTGCGGACATTTTTCGATGCCATGGCGCTACAGCTAA
AGGAGCCTGTCATTGTTAGCAAAATGGCGGCACGAAAAAAAATTACGGGCAACTTTGAGTTTCACGATCCTAACGCATTA
CTGGAGAAGCTTTCCCTACAACTGGGGCTGATTTGGTATTTCGATGGGCAGGCTATCTATATTTATGACGCCAGTGAAAT
GCGCAATGCCGTGGTTTCTTTACGCAACGTCTCACTCAATGAGTTCAACAATTTTCTAAAACGCTCAGGCTTATATAACA
AAAATTATCCGCTACGTGGCGATAACCGTAAAGGAACATTCTATGTTTCAGGGCCACCCGTTTATGTTGATATGGTGGTC
AACGCCGCCACCATGATGGACAAGCAAAACGATGGTATTGAGCTGGGACGCCAGAAAATAGGGGTGATGCGTCTGAATAA
TACCTTCGTGGGCGATCGTACCTACAATCTGCGCGATCAGAAAATGGTTATCCCCGGTATTGCCACGGCCATTGAAAGGT
TATTGCAGGGAGAGGAACAACCCTTAGGTAATATTGTCAGTAGCGAACCCCCGGCGATGCCAGCGTTTTCAGCGAATGGA
GAAAAAGGTAAAGCAGCAAATTATGCCGGTGGCATGAGTCTGCAGGAAGCTTTAAAGCAAAATGCCGCGGCGGGCAATAT
TAAAATCGTGGCTTATCCGGATACCAACAGTTTGTTAGTAAAAGGAACGGCTGAGCAGGTGCATTTTATCGAAATGCTGG
TTAAAGCGCTGGATGTCGCCAAACGTCACGTAGAATTATCCCTGTGGATTGTCGATCTTAATAAAAGCGATCTGGAGCGT
TTGGGCACTTCATGGAGCGGCAGCATTACTATTGGGGACAAACTTGGCGTGTCATTAAACCAGTCTTCAATAAGTACCCT
CGATGGCAGTCGATTCATCGCCGCGGTCAATGCGTTAGAAGAGAAGAAACAGGCGACGGTGGTTTCGCGCCCGGTATTAC
TGACTCAGGAAAATGTTCCCGCTATTTTTGATAACAACAGAACGTTTTACACCAAGCTGATTGGGGAACGTAATGTGGCG
CTTGAGCATGTAACATACGGAACAATGATCCGAGTGCTGCCCCGTTTTTCCGCAGATGGTCAGATAGAAATGTCGCTGGA
CATTGAAGATGGCAACGATAAGACGCCGCAATCTGATACTACCACCTCCGTAGATGCGTTACCCGAAGTCGGGCGAACGT
TAATTAGCACTATTGCGAGAGTGCCGCACGGAAAAAGTTTGCTGGTCGGGGGTTATACACGGGATGCAAATACCGATACT
GTCCAAAGTATTCCGTTTTTAGGCAAATTACCGCTTATTGGTAGCCTGTTCCGTTATTCCAGTAAGAATAAAAGTAATGT
TGTTCGTGTGTTCATGATTGAACCAAAAGAAATTGTCGACCCGTTAACGCCGGATGCCAGCGAATCGGTAAACAATATTC
TGAAGCAAAGCGGTGCCTGGAGTGGGGACGATAAGTTACAGAAATGGGTTCGTGTTTATCTGGATAGAGGTCAGGAGGCA
ATTAAATGA

Protein sequence :
MKTHILLARVLACAALVLVAPGYSSEKIPVTGSGFVAKDDSLRTFFDAMALQLKEPVIVSKMAARKKITGNFEFHDPNAL
LEKLSLQLGLIWYFDGQAIYIYDASEMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVV
NAATMMDKQNDGIELGRQKIGVMRLNNTFVGDRTYNLRDQKMVIPGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSANG
EKGKAANYAGGMSLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIVDLNKSDLER
LGTSWSGSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNVA
LEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDT
VQSIPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDASESVNNILKQSGAWSGDDKLQKWVRVYLDRGQEA
IK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
invG NP_457292.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 0.0 99
invG NP_806501.1 virulence-associated secretory protein Virulence SPI-1 Protein 0.0 99
invG YP_217817.1 invasion protein; outer membrane Virulence SPI-1 Protein 0.0 99
invG NP_461819.1 outer membrane secretin precursor Virulence SPI-1 Protein 0.0 99
ECs3733 NP_311760.1 EivG Not tested LIM Protein 2e-145 55
invG AAS66859.1 InvG Not tested SSR-2 Protein 4e-132 50
ysaC AAS66838.1 YsaC Not tested SSR-1 Protein 1e-92 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A3103 YP_002042139.2 YscC/HrcC family type III secretion outer membrane protein VFG0559 Protein 0.0 99
SNSL254_A3103 YP_002042139.2 YscC/HrcC family type III secretion outer membrane protein VFG1004 Protein 1e-125 51
SNSL254_A3103 YP_002042139.2 YscC/HrcC family type III secretion outer membrane protein VFG2463 Protein 3e-103 43