Gene Information

Name : SNSL254_A3098 (SNSL254_A3098)
Accession : YP_002042134.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : surface presentation of antigens protein SpaM
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3012760 - 3013203 bp
Length : 444 bp
Strand : -
Note : identified by match to protein family HMM PF02090

DNA sequence :
ATGCATTCGCTGACCAGAATTAAAGTATTGCAGCGGCGCTGTACGGTATTTCATTCACAGTGTGAGTCGATATTACTTCG
CTATCAGGATGAGGACCGCGGGCTGCAGGCCGAGGAGGAGGCGATCCTTGAACAAATAGCGGGTCTGAAATTGTTATTAG
ATACGCTGCGTGCAGAAAACAGACAGCTCAGTCGTGAGGAAATTTATACGTTATTACGTAAGCAGTCTATTGTTCGCCGG
CAGATAAAAGATTTAGAACTCCAGATTATACAAATTCAGGAAAAACGGAGAGAGCTGGAAAAGAAAAGGGAAGAGTTTCA
GAAAAAAAGTAAATATTGGTTGCGCAAAGAAGGGAACTATCAACGCTGGATAATCCGTCAGAAAAGATTCTATATCCAGC
GAGAGATACAGCAGGAAGAGGCCGAGTCAGAGGAGATAATTTAA

Protein sequence :
MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDRGLQAEEEAILEQIAGLKLLLDTLRAENRQLSREEIYTLLRKQSIVRR
QIKDLELQIIQIQEKRRELEKKREEFQKKSKYWLRKEGNYQRWIIRQKRFYIQREIQQEEAESEEII

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
invI NP_461814.1 needle complex assembly protein Virulence SPI-1 Protein 1e-36 99
spaM NP_457287.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-35 99
spaM NP_806496.1 virulence-associated secretory protein Virulence SPI-1 Protein 1e-35 99
invI YP_217812.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-36 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A3098 YP_002042134.1 surface presentation of antigens protein SpaM VFG0554 Protein 3e-37 99