Gene Information

Name : SNSL254_A2952 (SNSL254_A2952)
Accession : YP_002041998.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Unknown
Product : phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2878326 - 2879519 bp
Length : 1194 bp
Strand : +
Note : identified by match to protein family HMM PF00589

DNA sequence : 
GTGGCACGGACAACACGCCCCCTTACCAACACCGAAGTTCTGCGCGCTAAAGCGTTAGAGAAGGATCTAACGCTGCATGA
TGGCGATGGCCTTTTCCTGATAGTGAAAACCAGCGGGAAAAAGCTCTGGCGTTTCCGTTATCAACGTCCAGCGACAAAAC
AGCGGACAATGATGGGGCTTGGTGCTTTCCCTGCCCTTTCACTTGCTGACGCCCGAGGGTTAAGAGCGGATTACCTTGCC
TTGTTAGCCAACGGAATTGACCCACAAATTCAGGCCGAAGTTGTAGAGGAACAGCAACAAATCGCTCTGGACAGTATTTT
CTCAACAGTCGCCGCTAACTGGTTCCAGCTCAAAAGTAAAAGCGTTACCCCTGATTACGCAAAAGACATTTGGCGTTCAT
TGGAGAAAGATGTATTCCCTGCCATCGGTGAGATCCCCGTTCAGCAAATCAAAGCCCGAATATTGGTTGAAGCACTGGAG
CCAATCAAAGCTCGTGGAGCGCTTGAGACTGTACGTCGACTAGTGCAGCGTATTAACGAGATAATGATTTATGCCGTAAA
CACGGGTCTGATTGATGCCAATCCAGCATCAGGTATTGGAATGGCCTTTGAGAAGCCCAAAAAACAAAACATGCCGACGC
TGCGGCCAGAAGAATTGCCGAAGCTGATGCGTTCTTTAGTCATGTCAAATCTGTCTGTTCCGACTCGCTGTCTCATTGAA
TGGCAACTCCTGACGCTCGTGCGCCCTTCTGAGGCTTCCGGTGCTCGGTGGGCGGAGATCGATCTCTATGCAAAGCTCTG
GACTATTCCAGCCGAACGGATGAAAGCGAAGCGCGAGCATATTGTACCGCTATCTCCTCAGGCATTAGAGATTCTGGAAG
TCATGAAGCCAATCAGTGCTCATCGTGAACATGTTTTTCCGAGTCGGAATGACCCAAAGCAACCAATGAATAGCCAGACG
GCAAATGCTGCTTTAAAAAGGATTGGATATGGAGGTAAATTAGTAGCACATGGTTTGCGCGCAATAGCGAGTACTGCAAT
GAATGAAGCAGGTTTGAATTCAGATGTGATTGAAGCAGCACTTGCTCACATTGAGAAAAATGAGGTCCGGAGAGCATACA
ATCGCTCAACTTACCTTGAAAGAAGAAAGGAACTTATGAGTTGGTGGGGTAATTTCATAGTGAATAGCAAGTAA

Protein sequence : 
MARTTRPLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGAFPALSLADARGLRADYLA
LLANGIDPQIQAEVVEEQQQIALDSIFSTVAANWFQLKSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARILVEALE
PIKARGALETVRRLVQRINEIMIYAVNTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIE
WQLLTLVRPSEASGARWAEIDLYAKLWTIPAERMKAKREHIVPLSPQALEILEVMKPISAHREHVFPSRNDPKQPMNSQT
ANAALKRIGYGGKLVAHGLRAIASTAMNEAGLNSDVIEAALAHIEKNEVRRAYNRSTYLERRKELMSWWGNFIVNSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 4e-102 52
int AAK20773.1 integrase Not tested VPI Protein 6e-103 52
int AAK20803.1 integrase Not tested VPI Protein 6e-103 52
unnamed AAA82714.1 integrase Not tested VPI Protein 6e-103 52
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 8e-103 52
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 8e-103 52
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 2e-87 48
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 2e-87 48
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 6e-88 48
int AAD44730.1 Int Not tested SHI-2 Protein 2e-68 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-65 41
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-65 41
int ACU09430.1 integrase Not tested LEE Protein 1e-65 41
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-65 41
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 2e-64 41
int CAC39282.1 integrase Not tested LPA Protein 4e-67 41
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-67 41
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-67 41
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-67 41
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-67 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A2952 YP_002041998.1 phage integrase family protein VFG1092 Protein 9e-88 48
SNSL254_A2952 YP_002041998.1 phage integrase family protein VFG0783 Protein 6e-66 41
SNSL254_A2952 YP_002041998.1 phage integrase family protein VFG0598 Protein 1e-67 41