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Name : SNSL254_A0025 (SNSL254_A0025) Accession : YP_002039252.1 Strain : Salmonella enterica SL254 Genome accession: NC_011080 Putative virulence/resistance : Virulence Product : outer membrane usher protein FimD Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 25751 - 28417 bp Length : 2667 bp Strand : + Note : identified by match to protein family HMM PF00577 DNA sequence : TTGGCGCAACGACGCCAGCACGCGTTTGTCCAGCTTCATGATGTTATGCGTAATCAGCTTTTCATGACGCGATATTACTC CAGCGTAACTAAACCCGTATTAACCCCGCTGGCGTTGGCTATCGCACTGGCACCTGCGCCGGGGTGGGCGGAAAACTATT TCAACCCGGCATTTCTGTCTGACGACCCGTCTGCGGTGGCCGACCTATCGACCTTTTCCCGTAATGCCCAGGCGGCGGGG ATGTATCGCGTTGACGTTTACCTGAACAATACGTTTCTCGCGACCAGAGACATTGCCTTCCAGGCGGTGAAAACGACGGG AAAAAGCGCGCCCACCGATGACAGCGGATTACGCGCCTGCCTGACGCCTGAAATGCTTAAAAATATGGGGGTAAACACCG GGGCGTTTCCACTGTTGGCGAAGGCGGCGGCGGGAAGTTGCCCGGATCTCGCCAGTGCGATACCGGCCGCCCGGACCCGC TTTGATTTTGCGCAGCAACGTCTCGACATTAGCATCCCGCAGGCGGCGATGGTTGCCAGCGCCAGAGGCTATATCCCACC GCAATACTGGGATGAAGGTATTAACGCGTTGCTATTGAATTACACCTTTACCGGCGCGAATAGTCAGGATCGGAGCCCAG GCGGCAGTGCGGAGAACAGCTATTTTCTTGGATTGAATAGCGGCCTTAATCTGGGGGCCTGGCGGTTACGCGACTACTCC ACATGGAACGCGAATAGCGGCGATCAGAATAGCGACAGCGACTGGCAGCACATCAGTACTTATCTGGAACGTGATGTGGT CTTTTTGCAGGGAGAACTGACGGCAGGCGATAGTTATACCCCCTCCGCATTATTCGACAGCCTTCCTTTTCGCGGGCTAC AACTGGCGTCTGACGACAATATGTTGCCAGACAGCATGAAGGGCTTCGCGCCGACCATTCACGGCATTGCCAGAAGCAAC GCGCAAGTGACCATTCGGCAAAACGGCTACATCATTAATCAGCGCTATGTGCCGCCCGGGGCATTTACTATTAATGATCT CTATCCTACCGCCGCCAGCGGCGATTTGACTGTGGAAGTCAAAGAGTCCGACGGTTCTATTAATCGTTATAACGTGCCCT ATTCCGCCGTGCCGATTCTACAACGAGAAGGGCGGCTGAAGTATGCGGCGACGGTGGCGGAGTATCGCAGCGAGAGTAGT CAAAAAGAGAAGGTGAAATTCAGTCAGGCGACCTTGATATGGGGGTTACCGCATGGTTTTACGCTGTATGGCGGAACACA ACTTTCCAGTCATTATCACGCGCTGGCGATCGGCAGCGGCGCAAATCTGGGCGACTGGGGCGCGGTGTCGCTGGATGTCA CCCAGGCTACCAGTACGCTGGCGGATAATAACACCTACCAGGGGCAATCGCTGCGTTTCCTGTATGCCAAATCGCTTGCA CAGTCAGGAACCAATTTACAGCTTATGGGCTATCGCTATTCAACCTCGGGCTTTTACACGTTGGATGATACCACGTGGAA ACGGATGAGCGGCTATGACGATGACAGTCGGACTGACAGCGATAAAAGCAGGCCGGAATGGGCGGATTATTACAATCTTT ATTATACCAGGAGGGGCAAAGTACAACTCGATATTAACCAACAGCTAGGCGGGTTGGGATCGCTTTTTATTACCGGCAGT CAGCAAAGTTATTGGCACACTGATGAAAAGGATTCTTTGTTGCAGGTGGGATACAGCGATACGCTGGCGGGTATTGCATG GAGCGTTTCTTACAACAATAACAAATCCGCAGGCGATGCGGAGCGCGATCAAATTTTCGCGCTGAATATCTCGGTGCCGC TAAGTCAATGGCTGCAACACGATGATGAGGTCACGCGCCATCACAATGTTTACGCTACCTTTAGCACCAGTACGGACAAA CAGCATAACGTTACGCAGAATGCGGGCCTTAGCGGCACACTGCTGGACGAAAACAATCTTAGTTACAACATACAGCAAGG TTATCAGAATCACGGTATTGGCGAAAGCGGCGCCGCCAGTCTGGAATACGATGGCGCGAAAGGCAACGCCAACATTGGCT ATAACGTTAGCGATAACGGCGATTACCAGCAGGTGAATTATGGCCTGAGCGGCGGCCTGGTGGCGCACGCGCATGGAGTG ACACTAAGCCAGCCGCTGGGCAATACCAATATTTTGATTGCCGCGCCGGGCGCAGCCAACGTCGGCGTTGTCGACCAGCC GGGTATTCATACGGACGCGCGTGGCTATGCGGTGGTGCCGTATGCGACAACATATCGCCAAAACCGTATGGCGCTGGACG TTAACGCCATGGCTGATGATGTCGATATTGATGACGCGGTGACTCGCGTTGTGCCGACCGAAGGCGCGCTGGTTCTGGCC CGCTTTAAAGCGCGAGTCGGCGCGCGTGCCCTGGTAACGCTGAATCATAACGGTAAGCCTGTACCCTTTGGCGCAACGGT GACGGTGAATGATCGCCATGCGGAGGCGATTGTTGACGAAGCCGGGGAGGTCTATCTTTCCGGGTTGTCAGCGCAAGGCG TTCTGCACGTTCGCTGGGGGAACCTGCCGGATCAACAGTGCGTCGCGTCCTATCATCTCTCTTCCTCCCGTCAGATTCTG AGTCGACAACATGCGGAGTGTCATTAA Protein sequence : MAQRRQHAFVQLHDVMRNQLFMTRYYSSVTKPVLTPLALAIALAPAPGWAENYFNPAFLSDDPSAVADLSTFSRNAQAAG MYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTR FDFAQQRLDISIPQAAMVASARGYIPPQYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGAWRLRDYS TWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSN AQVTIRQNGYIINQRYVPPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSESS QKEKVKFSQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNTYQGQSLRFLYAKSLA QSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGS QQSYWHTDEKDSLLQVGYSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTRHHNVYATFSTSTDK QHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVSDNGDYQQVNYGLSGGLVAHAHGV TLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARGYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLA RFKARVGARALVTLNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHLSSSRQIL SRQHAECH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 0.0 | 51 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SNSL254_A0025 | YP_002039252.1 | outer membrane usher protein FimD | VFG0876 | Protein | 0.0 | 52 |
| SNSL254_A0025 | YP_002039252.1 | outer membrane usher protein FimD | VFG1645 | Protein | 0.0 | 50 |
| SNSL254_A0025 | YP_002039252.1 | outer membrane usher protein FimD | VFG0912 | Protein | 0.0 | 50 |
| SNSL254_A0025 | YP_002039252.1 | outer membrane usher protein FimD | VFG0446 | Protein | 1e-178 | 49 |
| SNSL254_A0025 | YP_002039252.1 | outer membrane usher protein FimD | VFG0454 | Protein | 4e-163 | 43 |
