Gene Information

Name : SNSL254_A2352 (SNSL254_A2352)
Accession : YP_002041434.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Unknown
Product : glycine betaine/carnitine/choline transport ATP-binding protein opuCA
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1125
EC number : -
Position : 2269186 - 2270133 bp
Length : 948 bp
Strand : -
Note : identified by match to protein family HMM PF00005

DNA sequence :
ATGATTGAATTTAACCATGTCAGTAAAACCTTCGGCGATCAACAGGCTGTTAGCGACCTCAATTTGCATTTTAGCGAAGG
CAGCTTTTCGGTGTTAATTGGCACCTCCGGCTCGGGAAAATCGACCACTCTGAAGATGATTAACCGGCTGGTAGAGCATG
ATAGCGGAACGATCCGTTTTGCCGGGGAAGAGATCCGCAGCCTGCCGGTGCTTGAACTGCGCCGTCGCATGGGCTATGCC
ATTCAGTCTATCGGCCTTTTTCCCCACTGGACGGTGGCGCAAAATATCGCCACCGTACCGCAACTACAAAAGTGGTCGCG
TGCGCGGATTAACGATCGTATTGATGAACTGATGGCATTATTGGGTCTGGAAAGCGCGCTGCGCGATCGCTATCCGCATC
AGCTTTCCGGCGGGCAACAGCAGCGGGTCGGCGTTGCGCGGGCGCTGGCTGCCGATCCGCAGGTATTGCTGATGGACGAG
CCTTTCGGCGCGCTTGATCCGGTAACGCGCGGCGCATTGCAGCAGGAGATGACCCGCATTCATCAGCTGCTGGGGCGCAC
CATCGTACTGGTGACGCACGACATCGACGAGGCGCTACGCCTCGCCGACCATCTGGTGCTGATGGACGGGGGCAATGTTA
TCCAGCAGGGATCGCCGCTTTCTATGCTGACCTCGCCGGAAAATGATTTCGTGCAGGCATTTTTTGGCCGCAGCGAGCTG
GGCGTAAGGCTGCTTTCGTTACGTAGCGTAGGCGATTATGTACGTCGGCATGAACAGCTCAGCGGCGACGCGCTGGTGGA
AGAGATGACGCTACGCGATGCGCTATCGATGTTTGTCGCCCGTCGGTGCGACGTCCTGCCGGTGGCGAATCAGCAGGGCG
AGCCCTGCGGTACGCTCCATTTCCGCGATCTACTTTCGGAGACGTCCCCCCGTGAAACGACTGTGTGA

Protein sequence :
MIEFNHVSKTFGDQQAVSDLNLHFSEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGTIRFAGEEIRSLPVLELRRRMGYA
IQSIGLFPHWTVAQNIATVPQLQKWSRARINDRIDELMALLGLESALRDRYPHQLSGGQQQRVGVARALAADPQVLLMDE
PFGALDPVTRGALQQEMTRIHQLLGRTIVLVTHDIDEALRLADHLVLMDGGNVIQQGSPLSMLTSPENDFVQAFFGRSEL
GVRLLSLRSVGDYVRRHEQLSGDALVEEMTLRDALSMFVARRCDVLPVANQQGEPCGTLHFRDLLSETSPRETTV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
opuBA YP_005124363.1 choline transport system ATP-binding protein Not tested Not named Protein 1e-56 51
opuBA NP_938494.1 choline transport system ATP-binding protein Not tested Not named Protein 7e-57 51