Gene Information

Name : SNSL254_A0024 (SNSL254_A0024)
Accession : YP_002039251.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : chaperone protein FimC
Function : -
COG functional category : N : Cell motility
COG ID : COG3121
EC number : -
Position : 25105 - 25791 bp
Length : 687 bp
Strand : +
Note : identified by match to protein family HMM PF00345; match to protein family HMM PF02753

DNA sequence : 
ATGAAAAAAAACGTACCGATTTTCCTTCGATTATTGCTACTGCTGTCGGCGGCCGGCCTGTCGTTTGCCGCGCAGGCGGG
AGGCATTGCGCTGGGCGCGACCAGAGTGATTTATCCGCAGGGAAGTAAGCAAACCTCCTTGCCGATTATTAATTCTTCTG
CCAGCAATGTTTTTTTAATTCAGTCATGGGTCGCCAATGCCGATGGTTCACGCTCGACGGATTTTATCATTACGCCGCCT
CTCTTTGTGATCCAGCCTAAAAAAGAAAATATATTACGTATTATGTATGTCGGGCCGTCATTACCGACCGATCGCGAAAG
CGTATTTTATTTAAACAGTAAAGCGATACCCTCTGTCGATAAAAATAAATTGACCGGCAACTCCCTGCAAATTGCGACGC
AAAGCGTGATTAAGCTATTTATTCGGCCGAAAAATCTGGCGGAGGCGCCAGCTCATGCCCCGTCGACGCTTCGCTGCCGT
AACGAGCGCGGCCAGCTAACGATTACTAACCCTTCGCCGTACTACGTTTCGATGGTTGAACTGTACAGCGCGGGGAAAAA
ACTGCCGAATACTATGGTACCGCCGAAAGGCGCGATCACTCTCCCGGCGACGCCCGGCCAGGTATCTTTGCGCACGGTAA
ACGATTTTGGCGCAACGACGCCAGCACGCGTTTGTCCAGCTTCATGA

Protein sequence : 
MKKNVPIFLRLLLLLSAAGLSFAAQAGGIALGATRVIYPQGSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPP
LFVIQPKKENILRIMYVGPSLPTDRESVFYLNSKAIPSVDKNKLTGNSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCR
NERGQLTITNPSPYYVSMVELYSAGKKLPNTMVPPKGAITLPATPGQVSLRTVNDFGATTPARVCPAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 8e-45 51
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 3e-42 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A0024 YP_002039251.1 chaperone protein FimC VFG0875 Protein 4e-46 52
SNSL254_A0024 YP_002039251.1 chaperone protein FimC VFG0445 Protein 5e-48 51
SNSL254_A0024 YP_002039251.1 chaperone protein FimC VFG0911 Protein 2e-42 49
SNSL254_A0024 YP_002039251.1 chaperone protein FimC VFG1644 Protein 2e-42 49
SNSL254_A0024 YP_002039251.1 chaperone protein FimC VFG0455 Protein 6e-35 42