|
Name : SNSL254_A0218 (SNSL254_A0218) Accession : YP_002039437.1 Strain : Salmonella enterica SL254 Genome accession: NC_011080 Putative virulence/resistance : Virulence Product : chaperone protein PapD Function : - COG functional category : N : Cell motility COG ID : COG3121 EC number : - Position : 236131 - 236883 bp Length : 753 bp Strand : + Note : identified by match to protein family HMM PF00345 DNA sequence : ATGATGCCATTAAAACGTTATAACCTGGCCGCTGTTTTGCTGCTTTTGCTGGGCGGCTACGGTAGCGCTCAAGCCGCCAT CGCGCCCGATCGCACCCGCCTGGTATTTCGCGGCGAAGATAAATCGATAAGCGTCGATCTGAAAAACGCCAACAGCAAAC TGCCCTATCTGGCGCAGTCCTGGGTGGAAGATGAGAAGGGCGTCAAAATCACCTCGCCTTTAATCGTCGTCCCACCGGTC CAGCGCATTGAGCCGTCGGCAATCGGACAGGTCAAAATTCAGGGGATGCCGGCGCTGGCGTCGCTCCCTAAGGATCGGGA AACCCTTTTTTATTACAACGTGCGCGAAATTCCGCCGCAAAGCGACAAGCCCAATACGCTGCAAATCGCCCTGCAAACGC GCATCAAAGTTTTTTACCGCCCGCAGGCGCTATCGAAAATCGATATGCAGCATCCCTGGCAATACAAGATCACCCTTCAG CGTCAGGGCAATGGCTATCAGGTGAGCAATCCGACCGGTTACTACGTGGTGTTAAGCAACGCCAGCAACCGCATGGACGG CACACCAGCCAGAGGCTTTAGCCCTTTAGTGATTGCACCAAAAAGCAACGTGACGCTGGGAGGGGACGCCAGTGAATTAG GTCACTCGCCTGTGCTGACTTACGTCAACGATTATGGCGCGCGGTTACCGCTGATTTTTAACTGTACTGACAACAGTTGT GCGGTAGATGAAGCAAAAAGCAGAAAGTCGTAA Protein sequence : MMPLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPV QRIEPSAIGQVKIQGMPALASLPKDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ RQGNGYQVSNPTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPVLTYVNDYGARLPLIFNCTDNSC AVDEAKSRKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfD | CAD42028.1 | PrfD protein | Virulence | PAI II 536 | Protein | 1e-47 | 44 |
| papD | AAZ04423.1 | P pilus chaperone | Virulence | PAI I APEC-O1 | Protein | 1e-47 | 44 |
| papD_2 | NP_757033.1 | PapD protein | Virulence | PAI II CFT073 | Protein | 3e-47 | 44 |
| papD | YP_002414014.1 | Chaperone protein PapD | Not tested | Not named | Protein | 3e-47 | 44 |
| papD | YP_854253.1 | pilus assembly protein chaperone PapD | Virulence | PAI I APEC-O1 | Protein | 2e-47 | 44 |
| papD | AAL67413.1 | PapD | Virulence | PAI II CFT073 | Protein | 2e-47 | 44 |
| pixD | CAE85158.1 | PixD protein | Not tested | PAI V 536 | Protein | 3e-48 | 44 |
| papD | NP_755464.1 | PapD protein | Virulence | PAI I CFT073 | Protein | 1e-42 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SNSL254_A0218 | YP_002039437.1 | chaperone protein PapD | VFG1547 | Protein | 6e-48 | 44 |
| SNSL254_A0218 | YP_002039437.1 | chaperone protein PapD | VFG0896 | Protein | 1e-47 | 44 |
| SNSL254_A0218 | YP_002039437.1 | chaperone protein PapD | VFG0885 | Protein | 6e-43 | 43 |
