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Name : SNSL254_A0191 (SNSL254_A0191) Accession : YP_002039410.1 Strain : Salmonella enterica SL254 Genome accession: NC_011080 Putative virulence/resistance : Virulence Product : outer membrane usher protein FimD Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 207231 - 209777 bp Length : 2547 bp Strand : - Note : identified by match to protein family HMM PF00577 DNA sequence : ATGCGCAAAAGGCAACACCGGGTATTTTATTTATCGCGCTGCGCTGTGTGTATCGCGCTGGGCAGCACGTTCGCACACGT TGCATGGGCGCGCGACTATTTCAATCCGGCATTTATTGAAAACCATGGGCAGGCGAGTCGCACAAGCGTCGATCTGTCGA CATTTGATAACGACAAAAGCCAGCTGCCAGGCACCTATTACGTCACTATCAATATCAATAAAACAGAAATCGGCGCGCGA AACGTTGATTTTCAACTCACGACGCTCAGTGACGGTCAACAGGCATTACAGGGCTGTTTACGGCTCCAGGAACTAAAAGA TAACGGCGTCAAAACCGACCTTTTTCCAACGCTGGAGAGTGAAAAAGGCTGCGTCGATCTCAGCGTTATCCCCGGCGCCA GCCAGCGGTTTGATTTTCAGCAACAGGCATTATCAGTAAGCATCCCGCAACTCTACATCGCCAACAACGCACGCGGCTAC GTACCGCCGGAAAAGTGGCAGGAGGGGATTACCGCGCTGATGCTGAACTACAGCTTCAGCGGCTATAAAGAGTACGGTTC CAGTGAGGATTCCGACGATGCGGAATCGAAGTATCTCGCTCTCCAGCCGGGTTTTAACCTCGGGCCGTGGCGTTTTCGCA ACTACAGTAACTGGAGTTCAAATAACGGCGAGAGCGGTAGCTGGAACAGCGTTTATAACTATTTACAGCGCGACATTATC GCGCTGAAAAGCCAGTTCACCGCCGGAGACAGCAATACGCCATCCGACGTGTTCGACAGCGTACCTTTTCGCGGCCTCCA GCTCACCTCTGACGATCAAATGCAGCCCAACAGCCAGCGTGGTTACGCCCCGACGATTCGCGGCATCGCCCGCTCAAACG CGCAGGTTATCGTGCGGCAAAACGGCTATATCGCCTATCAGACCGCCGTTTCGCCGGGCGAATTTGAAATCAACGATATG TTTCCCACCGGCAGCAACGGCGACTATGACGTGACGGTAAAAGAAACCGACGGCAGCGAACAGCACTTTATCGTGCCCTA CTCTTCGCTGCCGATTCTGCAGCGCACCGGACGGGCAAAATACAGCGTGACCGTGGGTAAATATCGCGATTATAACAACC ACACGCTGGACGACTTCGGCCAGGCGACCTTGCTGTACGGCCTGCCGTGGGGCATCACCCTGTACGGCGGCAGCCAGATT GCCGGCGATAAATACCAGTCCGTCGCCTTCGGCGTCGGGCAAAATATGCAGATGCTGGGGGCCATTTCCCTGGACGGCAT CTGGTCGCACGCCAAATTTGACGATGGCCGCAAAGAAATCGGGCAATCCTGGCGCGTCCGCTACAGCAAGGGCGTCGTCA GTACGGGCACCACGTTTTCGCTGGCCGGCTATCGTTACGCCAGCGAAAACTACAATTCGCTGAGCGAGGTGATCAACCCG GACGACGATTTTTATGATAACTACGGCAAGCGCCATAATCGTTTCGAAGCTTCGGTCAACCAGCAAATTAGCAATACGCT CGGTTCCTTAACGCTAAGTTGGGTCAAAGAAGATTACTGGCACAGCGCGCAGCAGATGGAATCCCTGAGCGCCAGCTACA ACAATAGCTGGGGTCCGGTGAGCTATACGCTGAGCTACAGCTATAACAAAAACACCTACCAGTACCGTTCGGGCAATGAC GATGATGACAACGACGACGATCGTTATAACCAGAACGATCGGCTGTTCACGCTGTCGCTGCACGTTCCGTTTACGGTGTT CGATTCCAGGCTATACGCCAGCTATATGCTGAACACGCGTAAGCACGATGCCACGGTGAACAGCACCACCCTTAGCGGCA CCGCGCTGCGTGACAGAAACCTGAACTGGTCGTTACAGCAAAGCCACAGCACACAAGACGGTGATTCCGGCGGGGTAAAC GCCAGCTATAAAGGCACTTATGCCAACCTCAACGCCGGTTACAATCAGTCGCCAGATAGCCAACAGGTCAGCTACGGCAT CAGCGGCGGCATTCTGGCGCACGAAAACGGTATTACCCTGAGCCAGCCGATTACCGGCGCGGCGATTTTAATTAAAGCGC CCGGCGCCAGCGGCGTTTCGGTTGAAAACCAGACCGGCGTCGCCACCGACTTCCGGGGTTATACGGTGATCCCCAACGTC ACGCCGTATTATCGCTACGATATCTCGCTCGACAGCAGCACGTTTGCTGACAACGTGGATATTCCGCTCAACAACCAGAC CGTCTACCCGACGCGTAATGCGGTGGTGCGCGCGGCGTATGACACGCATAAGGGCTATCGCGTGTTGTTAACGCTGACGC GCAGCAATGGCGAGCCCGTGCCCTTTGGCGCGACGGCAAGCGTCGATGGGCAGGATGCGAACCTGGCCAGTATCGTCGGC GATAAAGGCCAGGTCTTCCTCAGCGGCCTGCCGGAAGAGGGCCTGCTGCTGGTGAACTGGGGAAGCGCCTCTTGCCGCAC GGATTACCGCCTGGATATCAGCAAAAATATGAACGGCATAGTGATGGCGAACGCCGTCTGCCAGTGA Protein sequence : MRKRQHRVFYLSRCAVCIALGSTFAHVAWARDYFNPAFIENHGQASRTSVDLSTFDNDKSQLPGTYYVTININKTEIGAR NVDFQLTTLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGESGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKETDGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHTLDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSGND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRTDYRLDISKNMNGIVMANAVCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 2e-135 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SNSL254_A0191 | YP_002039410.1 | outer membrane usher protein FimD | VFG0454 | Protein | 1e-139 | 42 |
| SNSL254_A0191 | YP_002039410.1 | outer membrane usher protein FimD | VFG0912 | Protein | 5e-128 | 41 |
