Gene Information

Name : SNSL254_A1510 (SNSL254_A1510)
Accession : YP_002040651.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : S : Function unknown
COG ID : COG1729
EC number : -
Position : 1483919 - 1484434 bp
Length : 516 bp
Strand : +
Note : identified by match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM TIGR02552

DNA sequence :
GTGGGGGGAAATTTCCAGTATGATAGCGCAGAAAACGTACTCATGAAAAAAGACCCGACCCTACAACAGGCACATGACAC
GATGCGGTTTTTCCGGCGTGGCGGCTCGCTGCGTATGTTGTTGGATGACGATGTTACACAGCCGCTTAATACTCTGTATC
GCTATGCCATGCAGCTTATGGAGGTAAAAGAGTTCGCCGGCGCAGCGCGACTTTTTCAATTGTTGACGATATATGATGCC
TGGTCATTTGACTACTGGTTTAGGTTAGGGGAATGCTGCCAGGCTCAAAAACATTGGGGGGAAGCGATATACGCTTATGG
ACGCGCGGCACAAATTAAGATTGATGCGCCGCAGGCGCCATGGGCCGCAGCGGAATGCTATCTCGCGTGTGATAACGTCT
GTTATGCAATCAAAGCGTTAAAGGCCGTGGTGCGTATTTGCGGTGAGGTCAGTGAACATCAAATTCTCCGACAGCGTGCA
GAAAAGATATTACAGCAACTTTCTGACAGGAGCTAA

Protein sequence :
MGGNFQYDSAENVLMKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA
WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA
EKILQQLSDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 4e-69 99
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 2e-69 99
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 2e-69 99
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 9e-70 99
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 6e-70 99
sscA CAA12186.1 SscA Virulence SPI-2 Protein 6e-70 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A1510 YP_002040651.1 type III secretion low calcium response chaperone LcrH/SycD VFG0500 Protein 3e-70 99