Gene Information

Name : SNSL254_A1507 (SNSL254_A1507)
Accession : YP_002040648.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : type III secretion apparatus protein YscD/HrpQ family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1481329 - 1482528 bp
Length : 1200 bp
Strand : +
Note : identified by match to protein family HMM TIGR02500

DNA sequence :
ATGGTTAATCCAAAGAGCTCCTGGAAAATACGTTTTTTAGGTCACGTTTTACAAGGCCGGGAAGTATGGCTGAATGAAGG
TAACCTGTCACTGGGGGAGAAAGGATGCGATATTTGTATTCCGCTTACTATAAATGAAAAAATTATTCTGAGAGAACAGG
CAGATAATTTATTTGTTGATGCCGGGAAAGCCAGAGTTAGAGTTAATGGCCGCAGATTTAATCCAAATAAGCCGCTACCA
TCCAGTGGGGTTTTGCAGGTTGCGGGAGTGGCTATCGCGTTTGGTAAACAGGATTGTGAACTTGCTGATTATCAAATACC
CGTTTCCAGATCAGGCTACTGGTGGTTGGCTGGCGTATTCTTGATTTTTATCGGTGGAATGGGGGTCCTGTTAAGTATTA
GTGGTCAGCCTGAAACGGTAAATGACTTACCTTTGCGGGTTAAGTTTTTATTAGACAAAAGCAATATTCATTATGTGCGG
GCGCAATGGAAAGAAGATGGCAGCCTGCAGTTGTCCGGTTATTGCTCGTCAAGCGAACAGATGCAAAAGGTGAGAGCGAC
TCTCGAATCATGGGGGGTCATGTATCGGGATGGTGTAATCTGTGATGACTTATTGGTACGAGAAGTGCAGGATGTTTTGA
TAAAAATGGGTTACCCGCATGCTGAAGTATCCAGCGAAGGGCCGGGGAGCGTGTTAATTCATGATGATATACAAATGGAT
CAGCAATGGCGTAAGGTTCAACCATTACTTGCAGATATTCCCGGGTTATTGCACTGGCAGATTAGTCACTCTCATCAGTC
TCAGGGGGATGATATTATTTCTGCGATAATAGAGAACGGTTTAGTGGGGCTTGTCAATGTTACGCCAATGCGGCGCTCTT
TTGTTATCAGTGGTGTACTGGATGAATCTCATCAACGCATTTTGCAAGAAACGTTAGCAGCATTAAAGAAAAAGGATCCC
GCTCTTTCTTTAATTTATCAGGATATTGCGCCTTCCCATGATGAAAGCAAGTATCTGCCTGCGCCAGTGGCTGGCTTTGT
ACAGAGTCGCCATGGTAATTACTTATTACTGACGAATAAAGAGCGTTTACGTGTAGGGGCATTGTTACCCAATGGGGGAG
AAATTGTCCATCTGAGTGCCGATGTGGTAACGATTAAACATTATGATACTTTGATTAACTATCCATTAGATTTTAAGTGA

Protein sequence :
MVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICIPLTINEKIILREQADNLFVDAGKARVRVNGRRFNPNKPLP
SSGVLQVAGVAIAFGKQDCELADYQIPVSRSGYWWLAGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNIHYVR
AQWKEDGSLQLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLVREVQDVLIKMGYPHAEVSSEGPGSVLIHDDIQMD
QQWRKVQPLLADIPGLLHWQISHSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALKKKDP
ALSLIYQDIAPSHDESKYLPAPVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHYDTLINYPLDFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaD YP_216403.1 secretion system apparatus protein SsaD Virulence SPI-2 Protein 0.0 99
ssaD NP_456133.1 putative pathogenicity island protein Virulence SPI-2 Protein 0.0 99
ssaD NP_805066.1 pathogenicity island protein Virulence SPI-2 Protein 0.0 99
ssaD NP_460360.1 virulence protein Virulence SPI-2 Protein 0.0 99
spiB AAC44302.1 SpiB Virulence SPI-2 Protein 3e-149 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A1507 YP_002040648.1 type III secretion apparatus protein YscD/HrpQ family VFG0496 Protein 0.0 99