Gene Information

Name : SNSL254_A1349 (SNSL254_A1349)
Accession : YP_002040501.1
Strain : Salmonella enterica SL254
Genome accession: NC_011080
Putative virulence/resistance : Virulence
Product : virulence membrane protein PagC
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3637
EC number : -
Position : 1334042 - 1334599 bp
Length : 558 bp
Strand : +
Note : identified by match to protein family HMM PF06316

DNA sequence : 
ATGAAAAATATTATTTTATCCACTTTAGTTATTACTACAAGCGTTTTGGTTGTAAATATTGCACAGGCCGATACTAACGC
CTTTTCCGTGGGGTATGCACAAAGTAAAGTTCAGGATTTCAAAAATATCCGAGGGGTAAATGTGAAATACCGTTATGAGG
ATGACTCTCCGGTAAGTTTTATTTCCTCGCTAAGTTACTTATATGGAGACAGACAGGCTTCCGGGTCTGTTGAGCCTGAA
GGTATTCATTACCATGACAAGTTTGAGGTGAAGTACGGTTCTTTAATGGTTGGGCCAGCCTATCGATTGTCTGACAATTT
TTCGTTATACGCGCTGGCGGGTGTCGGCACGGTAAAGGCGACATTTAAAGAACATTCCACTCAGGATGGCGATTCTTTTT
CTAACAAAATTTCCTCAAGGAAAACGGGATTTGCCTGGGGCGCGGGTGTACAGATGAATCCGCTGGAGAATATCGTCGTC
GATGTTGGGTATGAAGGAAGCAACATCTCCTCTACAAAAATAAACGGCTTCAACGTCGGGGTTGGATACCGTTTCTGA

Protein sequence : 
MKNIILSTLVITTSVLVVNIAQADTNAFSVGYAQSKVQDFKNIRGVNVKYRYEDDSPVSFISSLSYLYGDRQASGSVEPE
GIHYHDKFEVKYGSLMVGPAYRLSDNFSLYALAGVGTVKATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVV
DVGYEGSNISSTKINGFNVGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pagC YP_216243.1 PhoP regulated protein: reduced macrophage survival Not tested SPI-11 Protein 6e-72 100
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 1e-27 47
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 7e-28 47
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 3e-27 46
pagC AGI37348.1 PagC Virulence OI-122 Protein 6e-20 43
pagC AGI37351.1 PagC Virulence OI-122 Protein 6e-20 43
pagC AGI37340.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37347.1 PagC Virulence OI-122 Protein 2e-19 43
pagC AGI37352.1 PagC Virulence OI-122 Protein 6e-19 42
pagC AGI37337.1 PagC Virulence OI-122 Protein 2e-19 42
pagC AGI37342.1 PagC Virulence OI-122 Protein 2e-19 42
pagC AGI37344.1 PagC Virulence OI-122 Protein 2e-19 42
pagC AGI37346.1 PagC Virulence OI-122 Protein 2e-19 42
pagC AGI37350.1 PagC Virulence OI-122 Protein 2e-19 42
pagC AGI37341.1 PagC Virulence OI-122 Protein 6e-19 42
pagC AGI37349.1 PagC Virulence OI-122 Protein 6e-19 42
pagC AGI37343.1 PagC Virulence OI-122 Protein 1e-18 41
pagC AGI37353.1 PagC Virulence OI-122 Protein 1e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SNSL254_A1349 YP_002040501.1 virulence membrane protein PagC VFG0442 Protein 7e-38 54