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Name : hpcD (SNSL254_A1199) Accession : YP_002040359.1 Strain : Salmonella enterica SL254 Genome accession: NC_011080 Putative virulence/resistance : Unknown Product : 5-carboxymethyl-2-hydroxymuconate delta-isomerase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG3232 EC number : 5.3.3.10 Position : 1194172 - 1194552 bp Length : 381 bp Strand : + Note : identified by match to protein family HMM PF02962 DNA sequence : ATGCCGCACTTTATTGCTGAATGTACTGAAAATATTCGCGAGCAGGCTGATTTACCTGGCCTGTTCAGCAAGGTAAACGA GGCGCTGGCCGCCAGCGGGATTTTCCCCATCGGCGGTATCCGCAGTCGCGCCCACTGGCTGGATACCTGGCAGATGGCTG ACGGTAAGCATGATTACGCGTTTGTGCATATGACGCTGAAAATCGGTGCCGGGCGCAGCCTGGAGAGCTGTCAGGAAGTC GGCAAAATGCTGTTTGGGCTGATTAAAGCCCACTTCGCCGACCTGATGGAGAACCGCTATCTGGCGCTGTCGTTTGAGAT TGCCGAGCTACATCCAACGCTCAATTACAAACAAAACAACGTACACGCGTTATTTAAATAG Protein sequence : MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRAHWLDTWQMADGKHDYAFVHMTLKIGAGRSLESCQEV GKMLFGLIKAHFADLMENRYLALSFEIAELHPTLNYKQNNVHALFK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hpaF | AAO17181.1 | HpaF | Not tested | tcd island | Protein | 5e-47 | 80 |
