Gene Information

Name : Smal_3166 (Smal_3166)
Accession : YP_002029548.1
Strain : Stenotrophomonas maltophilia R551-3
Genome accession: NC_011071
Putative virulence/resistance : Virulence
Product : two component sigma54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3546289 - 3547662 bp
Length : 1374 bp
Strand : +
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: xcb:XC_1061 two-component system regulatory protein

DNA sequence : 
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGTATCAGTACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGGCTGCCCGATGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGATATCGCCGTCCTGCGTGGACTGGTCAAGCATGCACTGGAACTCAACAACGCCGAACGCCCGCAGCCCGGGCCCAACG
CCGAACAGGGCGCACGCCTGCTGGGCGCTTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGTGAGTCCGGCGTTGGCAAGGAACTGGTCGCACGCACCATCCACGCCCAGGGCGCGCG
CGCGGCCGGACCGTTCATTCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAAAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAACTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGGCCGGTCGGTGCAGC
CAACGAAGAACCGGTGGACGTGCGCATCCTCTCTGCCACCCACCGCGATCTGGCCGAACTGGTCGAGGACGGGCGTTTCC
GCCACGACCTCTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGAG
CTGGCCGCGGCAGTGCTGGCACGACTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAGGC
ACTGGCCCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGGGCGCTGGCGCTGGCCGAGGAAG
ACTGCATCGGTGCAGACGACCTGCGCCTGCCGCAGCATGCTCCGCGCGTCCCCGGCGGTGCCGCTCCTGTCGAAGCCGTG
GCCGACCTGCAGCCTGGCAGCGCTGCCCTGCCCTCGTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCCGCACAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Protein sequence : 
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNAERPQPGPNAEQGARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFIPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGAANEEPVDVRILSATHRDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRVPGGAAPVEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 7e-95 48
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 7e-95 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smal_3166 YP_002029548.1 two component sigma54 specific Fis family transcriptional regulator BAC0089 Protein 7e-67 44
Smal_3166 YP_002029548.1 two component sigma54 specific Fis family transcriptional regulator BAC0467 Protein 1e-65 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smal_3166 YP_002029548.1 two component sigma54 specific Fis family transcriptional regulator VFG1214 Protein 4e-120 63
Smal_3166 YP_002029548.1 two component sigma54 specific Fis family transcriptional regulator VFG0116 Protein 1e-54 42