Gene Information

Name : Smal_2394 (Smal_2394)
Accession : YP_002028780.1
Strain : Stenotrophomonas maltophilia R551-3
Genome accession: NC_011071
Putative virulence/resistance : Virulence
Product : arginine:agmatin antiporter
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0531
EC number : -
Position : 2693753 - 2695105 bp
Length : 1353 bp
Strand : -
Note : PFAM: amino acid permease-associated region; KEGG: bvi:Bcep1808_5439 arginine:agmatin antiporter

DNA sequence :
ATGGCAGAAGCAAAGAAAATCGGGGTGGTCGGAGCCACCTTCCTCGTCGCCGGCAACATGATGGGCTCAGGCGTGTTCCT
GTTGCCGTCCAGTCTGGCCAAGATCGGCACCGCCTCGATCTGGGGCTGGCTGATCACCACCGCCGGTGCGCTGCTGCTGG
CCTTCGTTTTCGCCAAGCTGGGCAAGCTGGCACCCAAGGCGGGCGGTCCCTATGCCTACGCACGTGACTGGTTCGGCCCG
TACATGGGCTTCCAGACCAACACCATCTACTGGTTCGCCAACTGGATCGGCAACGTCGCCATTCCGATCGCGGCGGTGGG
CTATTTCAGTTACTTCTTCCCGATCCTGTCCGAGCCGCTGGTGCGCTGCATCGCGGTGCTGATCCTCGTATGGGCATTGA
GTTTCGCCAACATGATCGGCCCGGCCTTCGTCAGCCGCGTGCAGACGGTCACCACCAGCTTCGCCCTGGTACCGATCCTG
GGCATCGCCATCTTCGGCTGGTTCTTCTTCGATGCCGACATCTTCAAGGGCGCCTACAACGTGTCCGGCGAGTCGAACTT
CGGCGCGATCTCCAGTGCCGCGGCACTGACCCTGTGGGCCTTCATCGGCGTCGAATCCGCTTCGGTCACCGCCGGCGTGG
TGGAGAACCCGGAAAAGAACGTGGCCCGCGCCACCCTGGCCGGCGTGTTCCTGGCCGCCATCGCCTACATCGCAAGCTCC
TCGGTGATCATGGGCATGGTGCCCAATGGCGAGCTGCAGACCTCTGATGCCCCGTTCGCACTGGCTGCCGCCAAGGCCGT
CGGTGGCTGGGGCGGTGCGCTGGTGAGCCTGTGCGCCTTCATCGGCGCTGCCGGTTCGCTGGGCGGCTGGATCCTGCTGA
CCGCACAGAGTGCCAAGGCGGCCTCCGATGATGGCCTGTTCCCGAGCATCTTCAGCAAGACCAACAAGGACGACGTGCCG
GTCAAGGGCGTGCTGATCGTGGCGGTGCTGATGACCCTGGCGGTGCTGGTCACCTCCACCTCGGAAACCGCGTCGGCCCA
GTTCGACGTGATCACATCGGCGGCAGTGGTGCTGACCCTGCTGCCCTACATCTACTCGTGCGTGGCCTGCTACTTCGTGG
TCGAACGTTCGCACACCCTCGTCCACACCGGTGCGTTCTGGACCCTGACCAGCCTGACCGTCGTGTACTGCCTGTGGGCG
ATCTACGGCTCGTCGGGAACCATCGTGCAGTACGCCTTCCTGTTCGTGCTGTTCATCACCGTGTTCTATCCCTTCTTCAG
CGAGGAGCGCCGCCAGCAGCGGCAGCGCGCCCGCGAGGCATCGGCCATCAGCGCCGGCGCCCAGCGTTCATGA

Protein sequence :
MAEAKKIGVVGATFLVAGNMMGSGVFLLPSSLAKIGTASIWGWLITTAGALLLAFVFAKLGKLAPKAGGPYAYARDWFGP
YMGFQTNTIYWFANWIGNVAIPIAAVGYFSYFFPILSEPLVRCIAVLILVWALSFANMIGPAFVSRVQTVTTSFALVPIL
GIAIFGWFFFDADIFKGAYNVSGESNFGAISSAAALTLWAFIGVESASVTAGVVENPEKNVARATLAGVFLAAIAYIASS
SVIMGMVPNGELQTSDAPFALAAAKAVGGWGGALVSLCAFIGAAGSLGGWILLTAQSAKAASDDGLFPSIFSKTNKDDVP
VKGVLIVAVLMTLAVLVTSTSETASAQFDVITSAAVVLTLLPYIYSCVACYFVVERSHTLVHTGAFWTLTSLTVVYCLWA
IYGSSGTIVQYAFLFVLFITVFYPFFSEERRQQRQRAREASAISAGAQRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66196.1 putative lysin/cadaverin transporter Virulence PAI III 536 Protein 4e-56 45
cadB AAL67382.1 cadaverine/lysine antiporter Not tested PAI II CFT073 Protein 1e-49 42
cadB NP_756989.1 lysine/cadaverine antiporter Not tested PAI II CFT073 Protein 2e-49 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Smal_2394 YP_002028780.1 arginine:agmatin antiporter VFG1671 Protein 2e-56 45