Gene Information

Name : Ppha_0927 (Ppha_0927)
Accession : YP_002017831.1
Strain : Pelodictyon phaeoclathratiforme BU-1
Genome accession: NC_011060
Putative virulence/resistance : Unknown
Product : tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 963077 - 963991 bp
Length : 915 bp
Strand : -
Note : TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cph:Cpha266_1769 tyrosine recombinase XerD

DNA sequence :
ATGAACACGTTGCATCATGACTACCAAAACGTTCTTGAGAGCTTCCTGAACTATATGCTCATCGAGCGGAACTTTTCGGC
AAACACCCGGGAGTCATACAGCAACGATCTCAAGCGCTACCTGATCTTCATGCAGCACCGTTCCAGGAGACTGGAGATGA
TAACAAAAGAGCATATCGAGGAGTTTATGGGAGAGTTGTACGACATAGGGCTCGAAGCAAGCTCAATAGCACGAAACATC
TCTGCAATCCGATCCTTTCATAAATTTCTGGTTATCGAACGCACACTCAACACAAACCCGGCAGAGAACATCCATCAGCC
AAAAAAGGCCCAGTACCTGCCGAGCGTTTTGACCGTTGATGAAACCATGCGCTTGCTGGCAGCCCCACAAAGCGTAAACC
CACCCGGTAAATATGTGCTGCGCGACAAAGCGATGCTTGAACTCCTTTACGCAACAGGTGTCAGAGTCAGTGAACTCATT
AACATCCGACAGCAGAGCCTTTATCTTGATGCAGGTTTTGTAAGGATTTTCGGCAAGGGGTCAAAGGAGAGGCTTGTCCC
CGTCGGCACTTCCGCCATTGGATGGGTCACCCGATACCAGGCAGAACTCCGTATAGCCCTGGTACAGCGCAACTCCGATG
ACTACCTCTTTCTGAATGCACGCGGCATAAAGCTATCGCGCATGGCCCTCTTTACGATGGTGCAAAAGTATGCCGTCATG
GCAGGGATTGAAAAAAATATCAGCCCGCACACCTTTCGACATACCTTTGCCACCCATCTTCTCGAAGGAGGGGCAGATCT
TCGCGCAGTTCAGGAGATGCTCGGGCACCGCTCCATCGTCACCACACAAATCTACACACACATCGACCGCCTATTCATCA
AAGAGGTACACAAGACCTTCCATCCGAGAGGATGA

Protein sequence :
MNTLHHDYQNVLESFLNYMLIERNFSANTRESYSNDLKRYLIFMQHRSRRLEMITKEHIEEFMGELYDIGLEASSIARNI
SAIRSFHKFLVIERTLNTNPAENIHQPKKAQYLPSVLTVDETMRLLAAPQSVNPPGKYVLRDKAMLELLYATGVRVSELI
NIRQQSLYLDAGFVRIFGKGSKERLVPVGTSAIGWVTRYQAELRIALVQRNSDDYLFLNARGIKLSRMALFTMVQKYAVM
AGIEKNISPHTFRHTFATHLLEGGADLRAVQEMLGHRSIVTTQIYTHIDRLFIKEVHKTFHPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 5e-48 44
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 5e-48 44