Gene Information

Name : Ppha_0994 (Ppha_0994)
Accession : YP_002017895.1
Strain : Pelodictyon phaeoclathratiforme BU-1
Genome accession: NC_011060
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1030236 - 1030919 bp
Length : 684 bp
Strand : -
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cph:Cpha266_1205 two component transcriptional regulator, winged helix family

DNA sequence : 
ATGAGATTACTGATTATCGAAGATGAACCGGGAATAGCCGGATTCCTCAAGGATGGACTCGAAGAGGAGTACTTTGCCGT
TGATATTGCCTATGACGGAAAAAGTGGGCTCGACATGGCACTGATCAATGAATACGACCTGATTATCGTTGACTGGATGA
TTCCCGCCATCAGCGGTATTGAGGTCTGCAGGCAGATTCGAAAAACAGGGAATGCCGTCCCGATACTTTTTTTAACCGCA
AAAGATACGCTTGAAGATGTGATTTTCGGACTTGACGCCGGTGCCAATGATTATATCAAAAAACCCTTTGAGTTTGAAGA
GTTGCTTGCCCGCATCAGAGTACAGCTCAGGAATAAAAACCGAAATGACGATTCACTCAACGCCGGAATCCTTAACATTA
ACCCGGTAACCCATCAGGTATTCTGTGCTTCAACTGAAGTGACCCTCACACCGAAAGAATTTGCCCTCCTTGAATATCTT
GTACGTAATAAAGATCGAGTCTGTACCAGAAGCAGAATAATCGAGCATGTATGGGATATCCATTTTGATTCCGATACCTC
CGTCATTGATGTCTATATCACCTTTCTGCGCAGAAAACTCGAAGCTGCAGGTTGTGGAAACATTATTCAGACCATCCGGG
GAGTGGGATATATCGTTCGTGAACCAGAGATTTCAAAAACATGA

Protein sequence : 
MRLLIIEDEPGIAGFLKDGLEEEYFAVDIAYDGKSGLDMALINEYDLIIVDWMIPAISGIEVCRQIRKTGNAVPILFLTA
KDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQLRNKNRNDDSLNAGILNINPVTHQVFCASTEVTLTPKEFALLEYL
VRNKDRVCTRSRIIEHVWDIHFDSDTSVIDVYITFLRRKLEAAGCGNIIQTIRGVGYIVREPEISKT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-36 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator NC_002758.1121390.p0 Protein 2e-43 45
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator NC_010079.5776364.p0 Protein 2e-43 45
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator NC_002952.2859858.p0 Protein 2e-43 45
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator NC_007622.3794948.p0 Protein 2e-43 45
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator NC_003923.1003417.p0 Protein 2e-43 45
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator NC_013450.8614146.p0 Protein 2e-43 45
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator NC_002951.3238224.p0 Protein 2e-43 45
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator NC_007793.3914065.p0 Protein 2e-43 45
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator AE015929.1.gene1106. Protein 3e-39 44
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator BAC0638 Protein 2e-37 44
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator BAC0125 Protein 3e-42 43
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator BAC0083 Protein 3e-41 43
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator BAC0111 Protein 3e-42 43
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator BAC0197 Protein 8e-37 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator VFG1390 Protein 9e-47 44
Ppha_0994 YP_002017895.1 winged helix family two component transcriptional regulator VFG0596 Protein 1e-36 42